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The map label for this gene is 159900194

Identifier: 159900194

GI number: 159900194

Start: 4620263

End: 4620856

Strand: Reverse

Name: 159900194

Synonym: Haur_3677

Alternate gene names: NA

Gene position: 4620856-4620263 (Counterclockwise)

Preceding gene: 159900198

Following gene: 159900193

Centisome position: 72.81

GC content: 53.2

Gene sequence:

>594_bases
ATGGCATTGATCCAGCGGCTCGTTGCGGAACCAACGCCATTCGATCAGCAAACTCTTGATGATCATCGTGATGTGGCGTT
GGCGGTGGCGGGCGATCACGAGGCCTTTTTGCGCTTATACCAACGCTATATCACGCCCGTCTATCGGTTTTTGATGGCAC
GCTTGCAACAGCACCACGATGCCGAGGAAGTCGCGGCGTTAGCCTTCGAGCGAGCTTGGCAAAGCCTTGGTCAATTCAAA
CCCAATGGGCCATTCGTCGGCTGGTTATTTACGATTGTGCGGCGTTGTTTAGTCGATTTCTATCGGCGCGGCCAGCATCG
CCGCCAGCAAACCCAGCTATCGCCCGAATTGGCGAGTCACCAAGCTTCGCCCGAATTGACGATGCTTGAACTTGAGCAAC
AAAGTTTGGTGCACCACGCCTTGGCTCAACTAACACCTGAACAGCAAGAGTTGCTTCAATTGCGCTTTTTTGCCCAATTG
CCTTATGCCACAATTGCCCAAATTGTGGGCAAACGCGAGGCTGCGGTCAAAATGGCCGCCTATCGAGCGCTTGAACAACT
TAAACGGAGGCTCACCGATGACCAATCAATCTGA

Upstream 100 bases:

>100_bases
AGAGTGCTAATTTGATCAAGCTTGTTACTTTTTGGGCTTGGGCAACGATGTATTGAGTGCAAGGCCATTGCAGATTCAGA
CTATATGAGGAGGCTGATGT

Downstream 100 bases:

>100_bases
ACTTGAGCATGCTTTGGCTGAGCTAGAAACGAGCGAGCTTGGCCAGCAATTAATTGGGCAATCTCAGCGATTCAGCCCAT
CACCAGCAACAATTCAACGG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; DNA-Directed RNA Polymeracialized Sigma Subunit; ECF Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor ECF Subfamily; Transcriptional Regulator LuxR Family; RNA Polymerase ECF-Type Sigma Factor; ECF Subfamily Factor; RNA Polymerase Sigma-70 Factor

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MALIQRLVAEPTPFDQQTLDDHRDVALAVAGDHEAFLRLYQRYITPVYRFLMARLQQHHDAEEVAALAFERAWQSLGQFK
PNGPFVGWLFTIVRRCLVDFYRRGQHRRQQTQLSPELASHQASPELTMLELEQQSLVHHALAQLTPEQQELLQLRFFAQL
PYATIAQIVGKREAAVKMAAYRALEQLKRRLTDDQSI

Sequences:

>Translated_197_residues
MALIQRLVAEPTPFDQQTLDDHRDVALAVAGDHEAFLRLYQRYITPVYRFLMARLQQHHDAEEVAALAFERAWQSLGQFK
PNGPFVGWLFTIVRRCLVDFYRRGQHRRQQTQLSPELASHQASPELTMLELEQQSLVHHALAQLTPEQQELLQLRFFAQL
PYATIAQIVGKREAAVKMAAYRALEQLKRRLTDDQSI
>Mature_196_residues
ALIQRLVAEPTPFDQQTLDDHRDVALAVAGDHEAFLRLYQRYITPVYRFLMARLQQHHDAEEVAALAFERAWQSLGQFKP
NGPFVGWLFTIVRRCLVDFYRRGQHRRQQTQLSPELASHQASPELTMLELEQQSLVHHALAQLTPEQQELLQLRFFAQLP
YATIAQIVGKREAAVKMAAYRALEQLKRRLTDDQSI

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22846; Mature: 22714

Theoretical pI: Translated: 7.83; Mature: 7.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALIQRLVAEPTPFDQQTLDDHRDVALAVAGDHEAFLRLYQRYITPVYRFLMARLQQHHD
CHHHHHHHCCCCCCCHHHHHHHHCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
AEEVAALAFERAWQSLGQFKPNGPFVGWLFTIVRRCLVDFYRRGQHRRQQTQLSPELASH
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHH
QASPELTMLELEQQSLVHHALAQLTPEQQELLQLRFFAQLPYATIAQIVGKREAAVKMAA
CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
YRALEQLKRRLTDDQSI
HHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ALIQRLVAEPTPFDQQTLDDHRDVALAVAGDHEAFLRLYQRYITPVYRFLMARLQQHHD
HHHHHHHCCCCCCCHHHHHHHHCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
AEEVAALAFERAWQSLGQFKPNGPFVGWLFTIVRRCLVDFYRRGQHRRQQTQLSPELASH
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHH
QASPELTMLELEQQSLVHHALAQLTPEQQELLQLRFFAQLPYATIAQIVGKREAAVKMAA
CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
YRALEQLKRRLTDDQSI
HHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA