| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
Click here to switch to the map view.
The map label for this gene is 159900145
Identifier: 159900145
GI number: 159900145
Start: 4560588
End: 4561580
Strand: Reverse
Name: 159900145
Synonym: Haur_3628
Alternate gene names: NA
Gene position: 4561580-4560588 (Counterclockwise)
Preceding gene: 159900150
Following gene: 159900141
Centisome position: 71.87
GC content: 45.52
Gene sequence:
>993_bases ATGCGCTATCGTTTGTTGATTGGGTTGATCGTGGTCGTGATCTTGGCAGTAAGTTGTGGTCGTACACAGATAAGCAATGA CGAACGTTCCGCTCAATCAGCCACCCTTCAAACAGCCACAAGCCCTATTGAACCATCGCATACCCAAGCCCCATTGATTA TCTACGAACCAATTGTGAATACTCCAACCCGCGAATATCGGCTTTTTACCCAAAAAGAATGTGGTACTTATACTGAAGAA CCTGGGCCAGCAAGTTTTACCATCAACTGTTGGCATGGCTTAGTTAATGGCAACGATTTTTTCGTCGATGCCAATGGCGT TCGCCATAAACCAGCCAATTACGCGGTTCTTGCTGGGTTTCTTACGATTTATAAAAATGGTGAATTTATCAATCATTTTC ATTTTCCTGTCGAGCTAGGCGGCTTGACGATTGTCAGAGAGATGTTGCCATCGCTGGTTATTTCGGTTGGCGGGCACTTT GAGTCTCTGTTCAATTTAGAAACCTATCAATGGACGGATCTGGAAGGCATGCCGATTGTGCTCAATCCAACCACTACTAT TTGGCCAACGATTTCTATTCCGACGATTGCCCCAAGGATCGAGATTTTAGGGGTGAGCTTGCTTGATGGCGATACAAACC AGCCAATCCCGGGCTTTGATCCCATGCCCAATCCTGCGACTATCATCCTTGATTCGTTGCCAACAAAGCATTTTAATCTC CAAGTGCATACAAACCCCGCAACGATTGGTCATGTCGCCTTTCTGTTTGATGGAGATACTCCATATCGAATTGATGATAC GCCACCCTATACCTTTGTTGAGATCAATGAAAGGTGGTCGCCGCAAGTAGGTATTTACCAATTGGCAGTTGTTGCTTCCC CAGGCGATTCAGTCGAATGGCAACGCAATAGTACGGTGATAGAAATGATCGTCAGCAAACATCCAATTACCCCAACCATT GAAACCAAAGCTACGCCTGCAAAACCACGATAA
Upstream 100 bases:
>100_bases CTATAAGCCCATTTTCAGCTAATTATCATTGCTTGGGCTTGGCTGCACACATTAGGCTAATAGCAAACTGAGTAGAATTA AAGAAGGAAGAGGTTTTACG
Downstream 100 bases:
>100_bases GCAGAAAAGGTTGAGTGTTCAGGATGCAGGGTTGGGCTAGCGGAATAAGCAGCCTTCACGATCTTTGCGCCCTTCGTGGT TTCGGCCCTTCGTGTCCTTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 330; Mature: 330
Protein sequence:
>330_residues MRYRLLIGLIVVVILAVSCGRTQISNDERSAQSATLQTATSPIEPSHTQAPLIIYEPIVNTPTREYRLFTQKECGTYTEE PGPASFTINCWHGLVNGNDFFVDANGVRHKPANYAVLAGFLTIYKNGEFINHFHFPVELGGLTIVREMLPSLVISVGGHF ESLFNLETYQWTDLEGMPIVLNPTTTIWPTISIPTIAPRIEILGVSLLDGDTNQPIPGFDPMPNPATIILDSLPTKHFNL QVHTNPATIGHVAFLFDGDTPYRIDDTPPYTFVEINERWSPQVGIYQLAVVASPGDSVEWQRNSTVIEMIVSKHPITPTI ETKATPAKPR
Sequences:
>Translated_330_residues MRYRLLIGLIVVVILAVSCGRTQISNDERSAQSATLQTATSPIEPSHTQAPLIIYEPIVNTPTREYRLFTQKECGTYTEE PGPASFTINCWHGLVNGNDFFVDANGVRHKPANYAVLAGFLTIYKNGEFINHFHFPVELGGLTIVREMLPSLVISVGGHF ESLFNLETYQWTDLEGMPIVLNPTTTIWPTISIPTIAPRIEILGVSLLDGDTNQPIPGFDPMPNPATIILDSLPTKHFNL QVHTNPATIGHVAFLFDGDTPYRIDDTPPYTFVEINERWSPQVGIYQLAVVASPGDSVEWQRNSTVIEMIVSKHPITPTI ETKATPAKPR >Mature_330_residues MRYRLLIGLIVVVILAVSCGRTQISNDERSAQSATLQTATSPIEPSHTQAPLIIYEPIVNTPTREYRLFTQKECGTYTEE PGPASFTINCWHGLVNGNDFFVDANGVRHKPANYAVLAGFLTIYKNGEFINHFHFPVELGGLTIVREMLPSLVISVGGHF ESLFNLETYQWTDLEGMPIVLNPTTTIWPTISIPTIAPRIEILGVSLLDGDTNQPIPGFDPMPNPATIILDSLPTKHFNL QVHTNPATIGHVAFLFDGDTPYRIDDTPPYTFVEINERWSPQVGIYQLAVVASPGDSVEWQRNSTVIEMIVSKHPITPTI ETKATPAKPR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36573; Mature: 36573
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRYRLLIGLIVVVILAVSCGRTQISNDERSAQSATLQTATSPIEPSHTQAPLIIYEPIVN CCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHEEEECCCCCCCCCCCCCEEEEECCCC TPTREYRLFTQKECGTYTEEPGPASFTINCWHGLVNGNDFFVDANGVRHKPANYAVLAGF CCCHHEEEEECCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCCHHHEEEE LTIYKNGEFINHFHFPVELGGLTIVREMLPSLVISVGGHFESLFNLETYQWTDLEGMPIV EHEECCCCEEEEEECEEEECHHHHHHHHHHHHHHHCCCCHHHHHCCCEEEECCCCCCEEE LNPTTTIWPTISIPTIAPRIEILGVSLLDGDTNQPIPGFDPMPNPATIILDSLPTKHFNL ECCCCEEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEE QVHTNPATIGHVAFLFDGDTPYRIDDTPPYTFVEINERWSPQVGIYQLAVVASPGDSVEW EEECCCCCEEEEEEEEECCCCEEECCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCEE QRNSTVIEMIVSKHPITPTIETKATPAKPR CCCCEEEEEEHHCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRYRLLIGLIVVVILAVSCGRTQISNDERSAQSATLQTATSPIEPSHTQAPLIIYEPIVN CCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHEEEECCCCCCCCCCCCCEEEEECCCC TPTREYRLFTQKECGTYTEEPGPASFTINCWHGLVNGNDFFVDANGVRHKPANYAVLAGF CCCHHEEEEECCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCCHHHEEEE LTIYKNGEFINHFHFPVELGGLTIVREMLPSLVISVGGHFESLFNLETYQWTDLEGMPIV EHEECCCCEEEEEECEEEECHHHHHHHHHHHHHHHCCCCHHHHHCCCEEEECCCCCCEEE LNPTTTIWPTISIPTIAPRIEILGVSLLDGDTNQPIPGFDPMPNPATIILDSLPTKHFNL ECCCCEEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEE QVHTNPATIGHVAFLFDGDTPYRIDDTPPYTFVEINERWSPQVGIYQLAVVASPGDSVEW EEECCCCCEEEEEEEEECCCCEEECCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCEE QRNSTVIEMIVSKHPITPTIETKATPAKPR CCCCEEEEEEHHCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA