| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
Click here to switch to the map view.
The map label for this gene is prpE [H]
Identifier: 159899502
GI number: 159899502
Start: 3766453
End: 3769017
Strand: Reverse
Name: prpE [H]
Synonym: Haur_2983
Alternate gene names: 159899502
Gene position: 3769017-3766453 (Counterclockwise)
Preceding gene: 159899503
Following gene: 159899500
Centisome position: 59.39
GC content: 52.75
Gene sequence:
>2565_bases ATGGAATTAGGAATACCTGAATTGTCGTTGGTGGTATTGGTTGGGGCTTCTGGCTCAGGCAAATCGACCTTTGCGCAGCG CTATTTCAAGCCCACCGAAATTATTTCGTCCGATGCCTGTCGCGCAATGCTCACCGATGATGAAACTGATCAATCGGTCT CAGCTGATGCCTTTGATTTAGTGTATACAATTGCTGCCAAGCGCCTAGCCTTGGGCCGTTTGACTGTGATCGATGCGACC AATGTGCAGGCCGAAGCACGGAAACCGTTGTTAGCCTTGGCGCGGCATTATCACGTCTGGCCCGTGGCGATTGTGCTGCA CACGCCTGAACGCGTCTGTTTGGAGCGCAATTTAGGTCGCCCCAATCGCGATTTTGGCGATTTTGTGGTCAAGCGCCAAA TCGATAATTTGCGGCGTTCGCTGCGCACGCTGCACGATGAAGGCTTTCGGGTGGTGCATAGCGTTACGCCTGAGCAGGTT GATAGCGTTGAAATTGTGCGCCAACGCGCTTGGAGCAACCGTAAAGTTGAGCATGGCCCTTTCGATATTATTGGCGATGT GCATGGCTGTTACCCTGAACTTGAGCGCTTGCTGCTGGAATTGGGTTATAGCATTAATCTCACGCCAGGCCACAATTATG GCTTTACGGTTACGCCGCCTGCTGGCCGCCGCGCAGTGTTCGTCGGCGATTTAGTTGATCGCGGGCCAGATTCAGTTGGC GTGTTGCGCTTGGTGATGAGTATGGTTGAAACCGGCGCAGCCTTGTGCGTGCCAGGTAACCACGACGATAAATTAGCGCG GGCTTTGGCTGGACGTAAAGTCAAACAAACTCATGGCCTGGCCGAAACGATGCAAGCGTTGGCTGAAACTGATGAGGCTT TTCGCCAAGCAGTGCGCCATTTTATCGAAGGTATGGTCAGTCATTTAATTTTTGATGATGGAAAGTTGGTGGTAGCCCAT GCTGGCATGAAACAAGAGTTACAAGGGCGGATGTCGAAGCGCGTGCGCGAATTTGCCTTATATGGCGAAACTACGGGCGA AACCGATGAGTTTGGCTTGCCCGTGCGCTACCCCTGGGCCAAAGAATATCGCGGCGAGGGTTTGGTTGTTTATGGCCATA CGCCAATTCCCCAGCCCGAATGGCTGAACAACACGGTTGATATTGATACTGGCTGTGCCTTTGGCGGAGCACTCACCGCG CTGCGTTATCCCGAGCGTGAGTTTGTGCGAGTGCCAGCCTTTGCCCAATATGCCATTCCCAAACGGCCTTTGGAAATGAA TGCAACCCAACTTTCAGCTCAACAAGCGCATGATCAAGTGCTCGATTTGAGCGATTTTCAAGGCAAATTGCAAATTAGCA CCAGCTTGATCAGCCAAATCAACCTGCGCGAAGAACAAACCAGCGCCGCATTGGAAGTGATCAGCCGTTTTGCTATCGAG CCACAATGGCTGATCTACTTACCACCAACGATGTCGCCCTCTGAAACTAGCCAACTTGGCAGTTTCTTGGAGCATCCTGC CGAAGCCTTAGAATATTATCGGCGGGCGGGGGTTAATGAAGTTGTGTGCGAAGCTAAGCATATGGGTTCGCGGGCGATTG TGATTATCTGCCGCGATAGCGAGGTTGCTCGTGAGCGCTTTGGCGTAACTGGCGAGCAAATTGGCGTTTGCTACACCCGT ACTGGGCGGCGCTTCTTTAGCGATCCTGAGCTTGAAACGGCCTTTTTGCAACGGCTGCAACAAGCAATTAGTAAGCTTAA TTGGTGGGAAAGCTTCGATTCAGGCTGGTTTGCCTTAGATTGTGAACTGCTGCCGTGGTCGGCCAAAGCGCATGATTTGA TTCAAAATCAATATGCGCCCGTCGGAGCTGCCGCAACCGCTAGCATGAGCGCCGCCCAAGCCGCGTTGCGCCAAACGGTC ACGCGCCTGCCCGAATCGGTTGAGTTGCAAGCGCTGATTGCCCATACTCAATTGCGCCAACAGGCGGTGCAAGGCTATGT TGAGGCCTACCAACACTATTGCTGGCCAGTCCGCAGCCTCGATGATTTGCGGTTAGCGCCGTTTCATCTTTTAGCTTGTG AACAACGCCCATTGTATGATCGTGACCACGAGTGGCATATGCAAACTTTGGCAGCCTTGGCCGAGGCCGAGCCACGTTTA TTGGTAGCCACACCCTATCGCCTAGTCGATTTGCACGATCAAGCCAGCGTTGAGCAAACAATTGCATGGTGGCAAAAACT CACAGCGGCGGGTGGCGAAGGCATCGTCATCAAGCCCAAACAATGGGTTGTGCAGAATTCGCGCGGCATCGTACAACCAG CAATTAAATGTCGTGGCGCTGAATATCTGCGGATCATTTATGGCCCTGAATACGATTTGCCCGAAAATTTGGAGCGCTTA CGCCAGCGCGGCCTGAGTGGCAAACGTTCGTTAGCGCTGCGCGAATTTGCCTTAGGCCTCGAAGCCCTCGATCGTTTTGT CAATCGTGAGCCATTACGCCGTGTGCATGAATGTGTTTTTGGGGTGCTTGCGCTTGAAAGCGAGCCAATCGATCCACGGT TGTAA
Upstream 100 bases:
>100_bases CTATGCCGCAACCAAACTGCCAATTTTGCCCGATCTAGCGGCGGCGAATGCTTGGTTGCTCCAAGTGCGTCGCGCCCAAG TGGACTAAGGAGCTGGTTTC
Downstream 100 bases:
>100_bases GGCTTGGGGATCAGTTGTTGGGGGTCGGGGAGCAGGTTTGATCCACGAAGGACGCGAAGCGCACGAAGGATTGTAAGGAT GAAAGCTATGGGCTATCGGA
Product: metallophosphoesterase
Products: NA
Alternate protein names: Ap4A hydrolase; Diadenosine 5',5'''-P1,P4-tetraphosphate asymmetrical hydrolase; Diadenosine tetraphosphatase [H]
Number of amino acids: Translated: 854; Mature: 854
Protein sequence:
>854_residues MELGIPELSLVVLVGASGSGKSTFAQRYFKPTEIISSDACRAMLTDDETDQSVSADAFDLVYTIAAKRLALGRLTVIDAT NVQAEARKPLLALARHYHVWPVAIVLHTPERVCLERNLGRPNRDFGDFVVKRQIDNLRRSLRTLHDEGFRVVHSVTPEQV DSVEIVRQRAWSNRKVEHGPFDIIGDVHGCYPELERLLLELGYSINLTPGHNYGFTVTPPAGRRAVFVGDLVDRGPDSVG VLRLVMSMVETGAALCVPGNHDDKLARALAGRKVKQTHGLAETMQALAETDEAFRQAVRHFIEGMVSHLIFDDGKLVVAH AGMKQELQGRMSKRVREFALYGETTGETDEFGLPVRYPWAKEYRGEGLVVYGHTPIPQPEWLNNTVDIDTGCAFGGALTA LRYPEREFVRVPAFAQYAIPKRPLEMNATQLSAQQAHDQVLDLSDFQGKLQISTSLISQINLREEQTSAALEVISRFAIE PQWLIYLPPTMSPSETSQLGSFLEHPAEALEYYRRAGVNEVVCEAKHMGSRAIVIICRDSEVARERFGVTGEQIGVCYTR TGRRFFSDPELETAFLQRLQQAISKLNWWESFDSGWFALDCELLPWSAKAHDLIQNQYAPVGAAATASMSAAQAALRQTV TRLPESVELQALIAHTQLRQQAVQGYVEAYQHYCWPVRSLDDLRLAPFHLLACEQRPLYDRDHEWHMQTLAALAEAEPRL LVATPYRLVDLHDQASVEQTIAWWQKLTAAGGEGIVIKPKQWVVQNSRGIVQPAIKCRGAEYLRIIYGPEYDLPENLERL RQRGLSGKRSLALREFALGLEALDRFVNREPLRRVHECVFGVLALESEPIDPRL
Sequences:
>Translated_854_residues MELGIPELSLVVLVGASGSGKSTFAQRYFKPTEIISSDACRAMLTDDETDQSVSADAFDLVYTIAAKRLALGRLTVIDAT NVQAEARKPLLALARHYHVWPVAIVLHTPERVCLERNLGRPNRDFGDFVVKRQIDNLRRSLRTLHDEGFRVVHSVTPEQV DSVEIVRQRAWSNRKVEHGPFDIIGDVHGCYPELERLLLELGYSINLTPGHNYGFTVTPPAGRRAVFVGDLVDRGPDSVG VLRLVMSMVETGAALCVPGNHDDKLARALAGRKVKQTHGLAETMQALAETDEAFRQAVRHFIEGMVSHLIFDDGKLVVAH AGMKQELQGRMSKRVREFALYGETTGETDEFGLPVRYPWAKEYRGEGLVVYGHTPIPQPEWLNNTVDIDTGCAFGGALTA LRYPEREFVRVPAFAQYAIPKRPLEMNATQLSAQQAHDQVLDLSDFQGKLQISTSLISQINLREEQTSAALEVISRFAIE PQWLIYLPPTMSPSETSQLGSFLEHPAEALEYYRRAGVNEVVCEAKHMGSRAIVIICRDSEVARERFGVTGEQIGVCYTR TGRRFFSDPELETAFLQRLQQAISKLNWWESFDSGWFALDCELLPWSAKAHDLIQNQYAPVGAAATASMSAAQAALRQTV TRLPESVELQALIAHTQLRQQAVQGYVEAYQHYCWPVRSLDDLRLAPFHLLACEQRPLYDRDHEWHMQTLAALAEAEPRL LVATPYRLVDLHDQASVEQTIAWWQKLTAAGGEGIVIKPKQWVVQNSRGIVQPAIKCRGAEYLRIIYGPEYDLPENLERL RQRGLSGKRSLALREFALGLEALDRFVNREPLRRVHECVFGVLALESEPIDPRL >Mature_854_residues MELGIPELSLVVLVGASGSGKSTFAQRYFKPTEIISSDACRAMLTDDETDQSVSADAFDLVYTIAAKRLALGRLTVIDAT NVQAEARKPLLALARHYHVWPVAIVLHTPERVCLERNLGRPNRDFGDFVVKRQIDNLRRSLRTLHDEGFRVVHSVTPEQV DSVEIVRQRAWSNRKVEHGPFDIIGDVHGCYPELERLLLELGYSINLTPGHNYGFTVTPPAGRRAVFVGDLVDRGPDSVG VLRLVMSMVETGAALCVPGNHDDKLARALAGRKVKQTHGLAETMQALAETDEAFRQAVRHFIEGMVSHLIFDDGKLVVAH AGMKQELQGRMSKRVREFALYGETTGETDEFGLPVRYPWAKEYRGEGLVVYGHTPIPQPEWLNNTVDIDTGCAFGGALTA LRYPEREFVRVPAFAQYAIPKRPLEMNATQLSAQQAHDQVLDLSDFQGKLQISTSLISQINLREEQTSAALEVISRFAIE PQWLIYLPPTMSPSETSQLGSFLEHPAEALEYYRRAGVNEVVCEAKHMGSRAIVIICRDSEVARERFGVTGEQIGVCYTR TGRRFFSDPELETAFLQRLQQAISKLNWWESFDSGWFALDCELLPWSAKAHDLIQNQYAPVGAAATASMSAAQAALRQTV TRLPESVELQALIAHTQLRQQAVQGYVEAYQHYCWPVRSLDDLRLAPFHLLACEQRPLYDRDHEWHMQTLAALAEAEPRL LVATPYRLVDLHDQASVEQTIAWWQKLTAAGGEGIVIKPKQWVVQNSRGIVQPAIKCRGAEYLRIIYGPEYDLPENLERL RQRGLSGKRSLALREFALGLEALDRFVNREPLRRVHECVFGVLALESEPIDPRL
Specific function: Asymmetrically hydrolyzes Ap4p to yield AMP and ATP [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prpE family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004843 - InterPro: IPR006186 [H]
Pfam domain/function: PF00149 Metallophos [H]
EC number: =3.6.1.17 [H]
Molecular weight: Translated: 95831; Mature: 95831
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELGIPELSLVVLVGASGSGKSTFAQRYFKPTEIISSDACRAMLTDDETDQSVSADAFDL CCCCCCCEEEEEEEECCCCCHHHHHHHHCCHHHHHCCHHHHEECCCCCCCCCCCCHHHHH VYTIAAKRLALGRLTVIDATNVQAEARKPLLALARHYHVWPVAIVLHTPERVCLERNLGR HHHHHHHHHHHCEEEEEECCCCCHHHHCHHHHHHHHCCEEEEEEEEECCHHHHHHHCCCC PNRDFGDFVVKRQIDNLRRSLRTLHDEGFRVVHSVTPEQVDSVEIVRQRAWSNRKVEHGP CCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCC FDIIGDVHGCYPELERLLLELGYSINLTPGHNYGFTVTPPAGRRAVFVGDLVDRGPDSVG CCEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCEEECCCCCCEEEEEEHHHHCCCCHHH VLRLVMSMVETGAALCVPGNHDDKLARALAGRKVKQTHGLAETMQALAETDEAFRQAVRH HHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHH FIEGMVSHLIFDDGKLVVAHAGMKQELQGRMSKRVREFALYGETTGETDEFGLPVRYPWA HHHHHHHHHEECCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH KEYRGEGLVVYGHTPIPQPEWLNNTVDIDTGCAFGGALTALRYPEREFVRVPAFAQYAIP HHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHEECCCHHHHCCC KRPLEMNATQLSAQQAHDQVLDLSDFQGKLQISTSLISQINLREEQTSAALEVISRFAIE CCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCHHHHHHHHHHHHHHHCCC PQWLIYLPPTMSPSETSQLGSFLEHPAEALEYYRRAGVNEVVCEAKHMGSRAIVIICRDS CCEEEEECCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEEECCC EVARERFGVTGEQIGVCYTRTGRRFFSDPELETAFLQRLQQAISKLNWWESFDSGWFALD HHHHHHHCCCHHHEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE CELLPWSAKAHDLIQNQYAPVGAAATASMSAAQAALRQTVTRLPESVELQALIAHTQLRQ EEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH QAVQGYVEAYQHYCWPVRSLDDLRLAPFHLLACEQRPLYDRDHEWHMQTLAALAEAEPRL HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHEECCCCCCCCCCCHHHHHHHHHHHCCCCCE LVATPYRLVDLHDQASVEQTIAWWQKLTAAGGEGIVIKPKQWVVQNSRGIVQPAIKCRGA EEECCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHCCCCCCCCHHHHCCCC EYLRIIYGPEYDLPENLERLRQRGLSGKRSLALREFALGLEALDRFVNREPLRRVHECVF EEEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH GVLALESEPIDPRL HHHHHCCCCCCCCC >Mature Secondary Structure MELGIPELSLVVLVGASGSGKSTFAQRYFKPTEIISSDACRAMLTDDETDQSVSADAFDL CCCCCCCEEEEEEEECCCCCHHHHHHHHCCHHHHHCCHHHHEECCCCCCCCCCCCHHHHH VYTIAAKRLALGRLTVIDATNVQAEARKPLLALARHYHVWPVAIVLHTPERVCLERNLGR HHHHHHHHHHHCEEEEEECCCCCHHHHCHHHHHHHHCCEEEEEEEEECCHHHHHHHCCCC PNRDFGDFVVKRQIDNLRRSLRTLHDEGFRVVHSVTPEQVDSVEIVRQRAWSNRKVEHGP CCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCC FDIIGDVHGCYPELERLLLELGYSINLTPGHNYGFTVTPPAGRRAVFVGDLVDRGPDSVG CCEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCEEECCCCCCEEEEEEHHHHCCCCHHH VLRLVMSMVETGAALCVPGNHDDKLARALAGRKVKQTHGLAETMQALAETDEAFRQAVRH HHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHH FIEGMVSHLIFDDGKLVVAHAGMKQELQGRMSKRVREFALYGETTGETDEFGLPVRYPWA HHHHHHHHHEECCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH KEYRGEGLVVYGHTPIPQPEWLNNTVDIDTGCAFGGALTALRYPEREFVRVPAFAQYAIP HHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHEECCCHHHHCCC KRPLEMNATQLSAQQAHDQVLDLSDFQGKLQISTSLISQINLREEQTSAALEVISRFAIE CCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCHHHHHHHHHHHHHHHCCC PQWLIYLPPTMSPSETSQLGSFLEHPAEALEYYRRAGVNEVVCEAKHMGSRAIVIICRDS CCEEEEECCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHCCCEEEEEEECCC EVARERFGVTGEQIGVCYTRTGRRFFSDPELETAFLQRLQQAISKLNWWESFDSGWFALD HHHHHHHCCCHHHEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE CELLPWSAKAHDLIQNQYAPVGAAATASMSAAQAALRQTVTRLPESVELQALIAHTQLRQ EEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH QAVQGYVEAYQHYCWPVRSLDDLRLAPFHLLACEQRPLYDRDHEWHMQTLAALAEAEPRL HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHEECCCCCCCCCCCHHHHHHHHHHHCCCCCE LVATPYRLVDLHDQASVEQTIAWWQKLTAAGGEGIVIKPKQWVVQNSRGIVQPAIKCRGA EEECCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHCCCCCCCCHHHHCCCC EYLRIIYGPEYDLPENLERLRQRGLSGKRSLALREFALGLEALDRFVNREPLRRVHECVF EEEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH GVLALESEPIDPRL HHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA