| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is ypwA [H]
Identifier: 159899430
GI number: 159899430
Start: 3683244
End: 3684737
Strand: Reverse
Name: ypwA [H]
Synonym: Haur_2911
Alternate gene names: 159899430
Gene position: 3684737-3683244 (Counterclockwise)
Preceding gene: 159899435
Following gene: 159899429
Centisome position: 58.06
GC content: 50.8
Gene sequence:
>1494_bases ATGAGCCAAGCTCTTGAGCAACTTCGCGACCATCTCGCAACTATCCGCGATCTTAATCACACCGCAGGATTGCTTGCCTG GGATCAGCGCACTCAAATGCCGCGTGGTGGGGCCAGCACGCGTGCTGAGCAATTAGCTACCATCAGTCGAATTTCGCATG AGCTATTCACTGGCGAGAAAACCCTCAGCTTGCTTGATGCGGTTGATGTTGCTGATTTATCGCCCGACTCTGATGATGCT CGTTTGATCAGTCATACCCGCTACAATTACGAACGTTCGAGCAAATTGCCTGCCGAATTTGTCGCCAAACAATCGCGGGT ACGGGCATTAGCGGGCAAAGTTTGGGAAGATGCCCGTGCCAACGCCGATTTCAGCCAGTTTCAGCCGCATCTTGAAACGA TTGTTGAGATGGTGCGCGAACAAACCCAATTTCTGGGCTACGATGAACATCCCTACGATGCCTTGCTCAATAGCTACGAG CGTGGTTTGACAACCAAGCAAGCGCTTGGCTTGTTCGATGAATTGAAGGCCGGCACTGTGCCATTGGTGCTCAAAATTGC CGCGATGGGCGACGATGGCCGCGATGCCCCGTTGCATGGCAATTATCCCGAAGCGCTCCAAGAACAATTTGGCAAAAAAG TGACCGTGCGTTATGGCTACGATTGGAATCGCGGTCGGCAAGATCGCAGCACCCATCCATTTTGTAGCAACTTTGGGCGC AACGACGTACGGATCACCACGCGTTTTAATCCCAATTGGCTTTCACCAGCGCTTTTTGGCACATTGCATGAAACCGGGCA TGCCTTGTACGAACAAAATATCAAGCCCGAACTTGATCGCACGCCGCTTGGTCGCGGTACCTCGTTGGGTGTCCACGAAT CGCAATCGCGTATGTGGGAAAATATTGTTGGGCGTTCGCGACCATTCTGGGAGTTTTTCTACAGCGATTTGCAGGCGACC TTCCCTGAGCCATTAGCCAATGTCGATCTGGAGCGCTTCTATCGGGCCGTTAATGCGGTTAAGCCCTCATTGATTCGCGT CGAAGCTGATGAATTAACCTACAATTTGCATATTTTGCTGCGTATGGAGCTAGAAATTGCCTTGGTTGAAGGCACGCTCA AGGTTGCCGATTTGCCCGAAGCTTGGAACGCCAAGATGCAAGCCTACCTTGGCATCACCCCAGCCAACGATGCTGAGGGT GTACTCCAAGATATTCACTGGTCGGGCATGATGTTTGGCTACTTCCCCACCTACACTATTGGCAATGTGCTGTCGGTTCA ACTATTTGATACGGCAATCGCCCAACATCCTGAGATTTGGGATGAAATGCGCCGTGGTGAATTTGGCACACTGCTTGGTT GGATGCGTGAACATATCCATCAGCATGGCAGTAAATTCTTGCCTAACGAGTTGATTACCCGAGCAACGGGCCGGTCAATG GATGCAGCGCCTTACGTTAAGTATTTACAAACCAAATTTGCTGAATTATATTAA
Upstream 100 bases:
>100_bases CGTATGATCATATCAACATATGCTAAAATACTCTGGGAATAATCAGCCACTTAAGCTACATCTGGTTTATGCGGCTTTAA CGAAAAGGATTTAAGCATTT
Downstream 100 bases:
>100_bases CCACAGTAAATAAGCAATGCCTCGCCCCCTCTGCTCGCCAATTAGTCGAGGGGGCTGCTTTGAGCGTGAAATCTAGGCCC AAAGCAGGATGCACCGAGCC
Product: carboxypeptidase Taq
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 497; Mature: 496
Protein sequence:
>497_residues MSQALEQLRDHLATIRDLNHTAGLLAWDQRTQMPRGGASTRAEQLATISRISHELFTGEKTLSLLDAVDVADLSPDSDDA RLISHTRYNYERSSKLPAEFVAKQSRVRALAGKVWEDARANADFSQFQPHLETIVEMVREQTQFLGYDEHPYDALLNSYE RGLTTKQALGLFDELKAGTVPLVLKIAAMGDDGRDAPLHGNYPEALQEQFGKKVTVRYGYDWNRGRQDRSTHPFCSNFGR NDVRITTRFNPNWLSPALFGTLHETGHALYEQNIKPELDRTPLGRGTSLGVHESQSRMWENIVGRSRPFWEFFYSDLQAT FPEPLANVDLERFYRAVNAVKPSLIRVEADELTYNLHILLRMELEIALVEGTLKVADLPEAWNAKMQAYLGITPANDAEG VLQDIHWSGMMFGYFPTYTIGNVLSVQLFDTAIAQHPEIWDEMRRGEFGTLLGWMREHIHQHGSKFLPNELITRATGRSM DAAPYVKYLQTKFAELY
Sequences:
>Translated_497_residues MSQALEQLRDHLATIRDLNHTAGLLAWDQRTQMPRGGASTRAEQLATISRISHELFTGEKTLSLLDAVDVADLSPDSDDA RLISHTRYNYERSSKLPAEFVAKQSRVRALAGKVWEDARANADFSQFQPHLETIVEMVREQTQFLGYDEHPYDALLNSYE RGLTTKQALGLFDELKAGTVPLVLKIAAMGDDGRDAPLHGNYPEALQEQFGKKVTVRYGYDWNRGRQDRSTHPFCSNFGR NDVRITTRFNPNWLSPALFGTLHETGHALYEQNIKPELDRTPLGRGTSLGVHESQSRMWENIVGRSRPFWEFFYSDLQAT FPEPLANVDLERFYRAVNAVKPSLIRVEADELTYNLHILLRMELEIALVEGTLKVADLPEAWNAKMQAYLGITPANDAEG VLQDIHWSGMMFGYFPTYTIGNVLSVQLFDTAIAQHPEIWDEMRRGEFGTLLGWMREHIHQHGSKFLPNELITRATGRSM DAAPYVKYLQTKFAELY >Mature_496_residues SQALEQLRDHLATIRDLNHTAGLLAWDQRTQMPRGGASTRAEQLATISRISHELFTGEKTLSLLDAVDVADLSPDSDDAR LISHTRYNYERSSKLPAEFVAKQSRVRALAGKVWEDARANADFSQFQPHLETIVEMVREQTQFLGYDEHPYDALLNSYER GLTTKQALGLFDELKAGTVPLVLKIAAMGDDGRDAPLHGNYPEALQEQFGKKVTVRYGYDWNRGRQDRSTHPFCSNFGRN DVRITTRFNPNWLSPALFGTLHETGHALYEQNIKPELDRTPLGRGTSLGVHESQSRMWENIVGRSRPFWEFFYSDLQATF PEPLANVDLERFYRAVNAVKPSLIRVEADELTYNLHILLRMELEIALVEGTLKVADLPEAWNAKMQAYLGITPANDAEGV LQDIHWSGMMFGYFPTYTIGNVLSVQLFDTAIAQHPEIWDEMRRGEFGTLLGWMREHIHQHGSKFLPNELITRATGRSMD AAPYVKYLQTKFAELY
Specific function: Unknown
COG id: COG2317
COG function: function code E; Zn-dependent carboxypeptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M32 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001333 [H]
Pfam domain/function: PF02074 Peptidase_M32 [H]
EC number: NA
Molecular weight: Translated: 56563; Mature: 56432
Theoretical pI: Translated: 5.95; Mature: 5.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQALEQLRDHLATIRDLNHTAGLLAWDQRTQMPRGGASTRAEQLATISRISHELFTGEK CCHHHHHHHHHHHHHHHCCHHHCEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHH TLSLLDAVDVADLSPDSDDARLISHTRYNYERSSKLPAEFVAKQSRVRALAGKVWEDARA HHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC NADFSQFQPHLETIVEMVREQTQFLGYDEHPYDALLNSYERGLTTKQALGLFDELKAGTV CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC PLVLKIAAMGDDGRDAPLHGNYPEALQEQFGKKVTVRYGYDWNRGRQDRSTHPFCSNFGR EEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHCCC NDVRITTRFNPNWLSPALFGTLHETGHALYEQNIKPELDRTPLGRGTSLGVHESQSRMWE CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH NIVGRSRPFWEFFYSDLQATFPEPLANVDLERFYRAVNAVKPSLIRVEADELTYNLHILL HHHCCCCHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHCCCCEEEEEHHHEEEEEEEEE RMELEIALVEGTLKVADLPEAWNAKMQAYLGITPANDAEGVLQDIHWSGMMFGYFPTYTI EEEEEEEEEECCEEECCCCHHHCCCEEEEEECCCCCCHHHHHHHHHHCCEEECCCCHHHH GNVLSVQLFDTAIAQHPEIWDEMRRGEFGTLLGWMREHIHQHGSKFLPNELITRATGRSM CCHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCC DAAPYVKYLQTKFAELY CHHHHHHHHHHHHHHCC >Mature Secondary Structure SQALEQLRDHLATIRDLNHTAGLLAWDQRTQMPRGGASTRAEQLATISRISHELFTGEK CHHHHHHHHHHHHHHHCCHHHCEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHH TLSLLDAVDVADLSPDSDDARLISHTRYNYERSSKLPAEFVAKQSRVRALAGKVWEDARA HHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC NADFSQFQPHLETIVEMVREQTQFLGYDEHPYDALLNSYERGLTTKQALGLFDELKAGTV CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC PLVLKIAAMGDDGRDAPLHGNYPEALQEQFGKKVTVRYGYDWNRGRQDRSTHPFCSNFGR EEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHCCC NDVRITTRFNPNWLSPALFGTLHETGHALYEQNIKPELDRTPLGRGTSLGVHESQSRMWE CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH NIVGRSRPFWEFFYSDLQATFPEPLANVDLERFYRAVNAVKPSLIRVEADELTYNLHILL HHHCCCCHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHCCCCEEEEEHHHEEEEEEEEE RMELEIALVEGTLKVADLPEAWNAKMQAYLGITPANDAEGVLQDIHWSGMMFGYFPTYTI EEEEEEEEEECCEEECCCCHHHCCCEEEEEECCCCCCHHHHHHHHHHCCEEECCCCHHHH GNVLSVQLFDTAIAQHPEIWDEMRRGEFGTLLGWMREHIHQHGSKFLPNELITRATGRSM CCHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCC DAAPYVKYLQTKFAELY CHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8760912; 9384377 [H]