Click here to switch to the map view.

The map label for this gene is ycgE [C]

Identifier: 159899221

GI number: 159899221

Start: 3455596

End: 3456513

Strand: Direct

Name: ycgE [C]

Synonym: Haur_2702

Alternate gene names: 159899221

Gene position: 3455596-3456513 (Clockwise)

Preceding gene: 159899220

Following gene: 159899222

Centisome position: 54.45

GC content: 51.31

Gene sequence:

>918_bases
ATGAGCAAAATAACCGACCGATTCACCCATTTTAGCCAAGAGCCGCTCTACAACACCAAGGCAGTGGTGCAACGAACAGG
CGTTGCCGCCGATACGCTGCGAGCTTGGGAGCGTCGCTATGGTGTACCGTTTCCTGAGCGCACCGAAGGCCGCCAACGGG
CCTATTCTGATCGCGATATTGCGATTATCGATTGGTTGCGCCAACAAACGGAATCGGGATTAACCATCAGCCAAGCCGTG
GCCTTGCTGCAAACCGATAGTGTGATCGAACAACCAACGTATGATCTAGCGCCATTGGCCGAATTAAGCAACGATTGTGT
CCAAGCCTTGCTCAGCTTCGATGTGCTCAAAGCTGAAGATATTTTGAACAAAGCCTTTAGCGTTTATCCGGTTGAAACGG
TTTGTATCGAAGTCATCGAACGGGTGATGGTGGCAATTGGCGATGGTTGGCATGCTGGTAAAATCTCAATCTCGCAGGAA
CATGCCGCTACAGCGTTTATGTCGTTGAAATTGAGCAATTTGATTCATCAAGCGCGAACTCGCTCCAACCGTGGAGTGAT
TGTAGTGGCAACAGTGCCTGGTGAGCAGCATGAGCTTGGGGTGATGATGGTAGCCTTGTTTTTGATGCGGCGCGGCTGGC
GAGTTGTCTACCTTGGCAGCAACCTGCCTGCTGCCGAATTGCTGCATACAGTGCAACGGCTCAGCCCGAAATTGGTAGCG
CTGAGTGCCACCACCAAAGACAATTACAGCCAAGCCGTGCAGTTGCTCCAAGAACTGCACAAAATGCCAAAACCACCAAT
CATTGGCTACGGCGGAGCGGCGTTAAGTGGCACAACCCAGCAAACCGTGTTGCCAGGAATCTTTTTGGGCTATAACGCCG
ACCAAGCTTGCGATAAAATTGAGGAATTATTGGCCTAA

Upstream 100 bases:

>100_bases
TCGGGGCCGCACATGGGCACTGTTGAAACAACAACTTGCGCCGATTACAGCCTTGGCAATTGGTCGGGTTATCTCTTAGC
AGCAATGTTTGGTGGAGCAC

Downstream 100 bases:

>100_bases
TTCTTGCGCCGACTCATCCAAAACCAAACCGTTTGCGTAGCACCAAAAGCAAACCTATGGTGAGTCTGTAGCAGGAAGGA
TGCGCTATGTCTTGGCCTTC

Product: cobalamin B12-binding domain-containing protein

Products: NA

Alternate protein names: Cobalamin; Transcriptional Regulator MerR Family; Regulatory Protein MerR; Transcriptional Regulator; Transcriptional Regulator Merr Family; Transcriptional Regulatory Protein MerR-Family; MerR Family Regulatory Protein; MerR-Family Transcriptional Regulator; Transcriptional Repressor CarA; Transcriptional Regulator MerR Family Protein; Transcriptional Regulator CarH; MarR Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Transcriptional Regulator Marr Family; Response Regulator Receiver Protein

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MSKITDRFTHFSQEPLYNTKAVVQRTGVAADTLRAWERRYGVPFPERTEGRQRAYSDRDIAIIDWLRQQTESGLTISQAV
ALLQTDSVIEQPTYDLAPLAELSNDCVQALLSFDVLKAEDILNKAFSVYPVETVCIEVIERVMVAIGDGWHAGKISISQE
HAATAFMSLKLSNLIHQARTRSNRGVIVVATVPGEQHELGVMMVALFLMRRGWRVVYLGSNLPAAELLHTVQRLSPKLVA
LSATTKDNYSQAVQLLQELHKMPKPPIIGYGGAALSGTTQQTVLPGIFLGYNADQACDKIEELLA

Sequences:

>Translated_305_residues
MSKITDRFTHFSQEPLYNTKAVVQRTGVAADTLRAWERRYGVPFPERTEGRQRAYSDRDIAIIDWLRQQTESGLTISQAV
ALLQTDSVIEQPTYDLAPLAELSNDCVQALLSFDVLKAEDILNKAFSVYPVETVCIEVIERVMVAIGDGWHAGKISISQE
HAATAFMSLKLSNLIHQARTRSNRGVIVVATVPGEQHELGVMMVALFLMRRGWRVVYLGSNLPAAELLHTVQRLSPKLVA
LSATTKDNYSQAVQLLQELHKMPKPPIIGYGGAALSGTTQQTVLPGIFLGYNADQACDKIEELLA
>Mature_304_residues
SKITDRFTHFSQEPLYNTKAVVQRTGVAADTLRAWERRYGVPFPERTEGRQRAYSDRDIAIIDWLRQQTESGLTISQAVA
LLQTDSVIEQPTYDLAPLAELSNDCVQALLSFDVLKAEDILNKAFSVYPVETVCIEVIERVMVAIGDGWHAGKISISQEH
AATAFMSLKLSNLIHQARTRSNRGVIVVATVPGEQHELGVMMVALFLMRRGWRVVYLGSNLPAAELLHTVQRLSPKLVAL
SATTKDNYSQAVQLLQELHKMPKPPIIGYGGAALSGTTQQTVLPGIFLGYNADQACDKIEELLA

Specific function: Unknown

COG id: COG5012

COG function: function code R; Predicted cobalamin binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33732; Mature: 33601

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKITDRFTHFSQEPLYNTKAVVQRTGVAADTLRAWERRYGVPFPERTEGRQRAYSDRDI
CCCHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCH
AIIDWLRQQTESGLTISQAVALLQTDSVIEQPTYDLAPLAELSNDCVQALLSFDVLKAED
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ILNKAFSVYPVETVCIEVIERVMVAIGDGWHAGKISISQEHAATAFMSLKLSNLIHQART
HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHH
RSNRGVIVVATVPGEQHELGVMMVALFLMRRGWRVVYLGSNLPAAELLHTVQRLSPKLVA
CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEE
LSATTKDNYSQAVQLLQELHKMPKPPIIGYGGAALSGTTQQTVLPGIFLGYNADQACDKI
EECCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHCHHEECCCCHHHHHHH
EELLA
HHHHC
>Mature Secondary Structure 
SKITDRFTHFSQEPLYNTKAVVQRTGVAADTLRAWERRYGVPFPERTEGRQRAYSDRDI
CCHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCH
AIIDWLRQQTESGLTISQAVALLQTDSVIEQPTYDLAPLAELSNDCVQALLSFDVLKAED
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ILNKAFSVYPVETVCIEVIERVMVAIGDGWHAGKISISQEHAATAFMSLKLSNLIHQART
HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHH
RSNRGVIVVATVPGEQHELGVMMVALFLMRRGWRVVYLGSNLPAAELLHTVQRLSPKLVA
CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEE
LSATTKDNYSQAVQLLQELHKMPKPPIIGYGGAALSGTTQQTVLPGIFLGYNADQACDKI
EECCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHCHHEECCCCHHHHHHH
EELLA
HHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA