| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is yieF [H]
Identifier: 159899204
GI number: 159899204
Start: 3442949
End: 3443512
Strand: Direct
Name: yieF [H]
Synonym: Haur_2685
Alternate gene names: 159899204
Gene position: 3442949-3443512 (Clockwise)
Preceding gene: 159899203
Following gene: 159899205
Centisome position: 54.25
GC content: 50.18
Gene sequence:
>564_bases ATGGCAGACACACTCAAGATTGTTGGGATTTCGGGCAGCTTGCGCAAGGATTCGTATAACACGGCGTTATTGTGGGCTGC GGCTGGGTTAATGCCCGATGGCGTGGAGTTCAACATTATCCTATTGCATGATATTCCGTTATTCAATGAGGATGTTGAGC AACACGGCTTCCCAAGCAGCGTGCAACATCTACGCCAAGCAATTAGTGAAGCCGATGCTGTACTGATTGCCACGCCTGAG TACAACTACTCAATTCCTGGCGTGCTGAAAAATGCGCTCGATTGGGCTTCGCGGCCTGGTAGCGCTGGCGAGATGCCACT GAGCGGCAAGCCCTTGGGAATTATTGGCGCAAGCGTCGGAGCCTATGGCACTGCTCGCGGTCAGCACCATTTACGCCAAG TGACCGTCAATACCAACATGCATCCCTTAAATAAACCTGAGGTGATGATTACCTTCGCAGACAAAAAGTTTAGCGATGGT CAATTACACGATGAACCAACCCGCAAGGTTGTACGTAACCATTTAGAAGCGCTTGTGGCTTGGACGAAACGGTTAAGTCA ATAA
Upstream 100 bases:
>100_bases AGGACAAAAAGATGGACAACATGGCGGACAACACGATCGTATTATCGCGATACAATCAGTGTGTGATCATCAACAACCAT TTGTTGGAGGAAGTTCGTCT
Downstream 100 bases:
>100_bases ATAGTTAACTTAGGGCAACCGGGTCGTCGCATGTTCACACAAAGGAGTGTTGATTATGTCGATTTTGGGCTTACATCATA TTACAATTGTTAGTGCAGAC
Product: NAD(P)H dehydrogenase (quinone)
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 187; Mature: 186
Protein sequence:
>187_residues MADTLKIVGISGSLRKDSYNTALLWAAAGLMPDGVEFNIILLHDIPLFNEDVEQHGFPSSVQHLRQAISEADAVLIATPE YNYSIPGVLKNALDWASRPGSAGEMPLSGKPLGIIGASVGAYGTARGQHHLRQVTVNTNMHPLNKPEVMITFADKKFSDG QLHDEPTRKVVRNHLEALVAWTKRLSQ
Sequences:
>Translated_187_residues MADTLKIVGISGSLRKDSYNTALLWAAAGLMPDGVEFNIILLHDIPLFNEDVEQHGFPSSVQHLRQAISEADAVLIATPE YNYSIPGVLKNALDWASRPGSAGEMPLSGKPLGIIGASVGAYGTARGQHHLRQVTVNTNMHPLNKPEVMITFADKKFSDG QLHDEPTRKVVRNHLEALVAWTKRLSQ >Mature_186_residues ADTLKIVGISGSLRKDSYNTALLWAAAGLMPDGVEFNIILLHDIPLFNEDVEQHGFPSSVQHLRQAISEADAVLIATPEY NYSIPGVLKNALDWASRPGSAGEMPLSGKPLGIIGASVGAYGTARGQHHLRQVTVNTNMHPLNKPEVMITFADKKFSDGQ LHDEPTRKVVRNHLEALVAWTKRLSQ
Specific function: Unknown
COG id: COG0431
COG function: function code R; Predicted flavoprotein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ssuE family [H]
Homologues:
Organism=Escherichia coli, GI1790149, Length=189, Percent_Identity=40.2116402116402, Blast_Score=134, Evalue=5e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005025 [H]
Pfam domain/function: PF03358 FMN_red [H]
EC number: NA
Molecular weight: Translated: 20401; Mature: 20269
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADTLKIVGISGSLRKDSYNTALLWAAAGLMPDGVEFNIILLHDIPLFNEDVEQHGFPSS CCCCEEEEECCCCCCCCCCCCEEEEEHHCCCCCCCEEEEEEEECCCCCCCCHHHCCCCHH VQHLRQAISEADAVLIATPEYNYSIPGVLKNALDWASRPGSAGEMPLSGKPLGIIGASVG HHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCC AYGTARGQHHLRQVTVNTNMHPLNKPEVMITFADKKFSDGQLHDEPTRKVVRNHLEALVA CCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH WTKRLSQ HHHHHCC >Mature Secondary Structure ADTLKIVGISGSLRKDSYNTALLWAAAGLMPDGVEFNIILLHDIPLFNEDVEQHGFPSS CCCEEEEECCCCCCCCCCCCEEEEEHHCCCCCCCEEEEEEEECCCCCCCCHHHCCCCHH VQHLRQAISEADAVLIATPEYNYSIPGVLKNALDWASRPGSAGEMPLSGKPLGIIGASVG HHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCC AYGTARGQHHLRQVTVNTNMHPLNKPEVMITFADKKFSDGQLHDEPTRKVVRNHLEALVA CCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH WTKRLSQ HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]