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The map label for this gene is ybeY [C]

Identifier: 159899181

GI number: 159899181

Start: 3416741

End: 3417265

Strand: Direct

Name: ybeY [C]

Synonym: Haur_2662

Alternate gene names: 159899181

Gene position: 3416741-3417265 (Clockwise)

Preceding gene: 159899180

Following gene: 159899182

Centisome position: 53.84

GC content: 51.43

Gene sequence:

>525_bases
ATGTTAGAACTAACAGCCCATATTGAAGTTGTGCCCACCGATCTTGCGCTCGATACCAGTTTATTAGAGCAAGTCGTGGC
CCAAGTGCTCGCCGATGAAGGCCAAACTGGCACATGGGAAATTGGCATTCGCATCACCAACGATCAAGAATTGCATGAAC
TCAATCGCCAATATCGTGGCGTTGATCGGCCAACCGATGTGCTTTCGTTTGGCGAATACGAAGATGATGACGATGATTTT
ATCGTGCCCGACGGCGTGTACGATGATGATGAATTCGATGACCCTGAGGCTGATGAAGCGGCCTATCTCGGCGATTTGGC
AATTTCGTATGAGCGGGTGCTGGCTCAAGCCCAAGAATATGCCCATTCAAGCCGCCGCGAATTATGCTATTTGGTAGCTC
ACGGTACATTGCACTTGCTCGGCTACGATCACGAAACCGACGAGGAGCGCGAAGATATGCGCCAACGCGAAGAAAAAGCC
CTCAGCACGCTTGGCATCACCCGCGAAGCCGAGCCGTTTGTTTAG

Upstream 100 bases:

>100_bases
AAAACGCTCCAAGGGATCTATCATCCACGGGTTGAGTATCCCAAATTGATGCGGGAACCGCAAAATAAATAACCATCTAC
CAACAAGGAATTTGCGCGGT

Downstream 100 bases:

>100_bases
GGGCGAGGGATCAGGGTCTAGAAATTGATCCACAAAGGGCAGGGAGATCGAAACCGCGAAGCACACGAAGGTCGCGAAGG
TTAAGTTTTTAGCCACAGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MLELTAHIEVVPTDLALDTSLLEQVVAQVLADEGQTGTWEIGIRITNDQELHELNRQYRGVDRPTDVLSFGEYEDDDDDF
IVPDGVYDDDEFDDPEADEAAYLGDLAISYERVLAQAQEYAHSSRRELCYLVAHGTLHLLGYDHETDEEREDMRQREEKA
LSTLGITREAEPFV

Sequences:

>Translated_174_residues
MLELTAHIEVVPTDLALDTSLLEQVVAQVLADEGQTGTWEIGIRITNDQELHELNRQYRGVDRPTDVLSFGEYEDDDDDF
IVPDGVYDDDEFDDPEADEAAYLGDLAISYERVLAQAQEYAHSSRRELCYLVAHGTLHLLGYDHETDEEREDMRQREEKA
LSTLGITREAEPFV
>Mature_174_residues
MLELTAHIEVVPTDLALDTSLLEQVVAQVLADEGQTGTWEIGIRITNDQELHELNRQYRGVDRPTDVLSFGEYEDDDDDF
IVPDGVYDDDEFDDPEADEAAYLGDLAISYERVLAQAQEYAHSSRRELCYLVAHGTLHLLGYDHETDEEREDMRQREEKA
LSTLGITREAEPFV

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=127, Percent_Identity=37.007874015748, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 19819; Mature: 19819

Theoretical pI: Translated: 3.84; Mature: 3.84

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELTAHIEVVPTDLALDTSLLEQVVAQVLADEGQTGTWEIGIRITNDQELHELNRQYRG
CCEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHCC
VDRPTDVLSFGEYEDDDDDFIVPDGVYDDDEFDDPEADEAAYLGDLAISYERVLAQAQEY
CCCCHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AHSSRRELCYLVAHGTLHLLGYDHETDEEREDMRQREEKALSTLGITREAEPFV
HHHHHHHEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLELTAHIEVVPTDLALDTSLLEQVVAQVLADEGQTGTWEIGIRITNDQELHELNRQYRG
CCEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHCC
VDRPTDVLSFGEYEDDDDDFIVPDGVYDDDEFDDPEADEAAYLGDLAISYERVLAQAQEY
CCCCHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AHSSRRELCYLVAHGTLHLLGYDHETDEEREDMRQREEKALSTLGITREAEPFV
HHHHHHHEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA