| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is dltE [H]
Identifier: 159899173
GI number: 159899173
Start: 3404328
End: 3405053
Strand: Reverse
Name: dltE [H]
Synonym: Haur_2654
Alternate gene names: 159899173
Gene position: 3405053-3404328 (Counterclockwise)
Preceding gene: 159899174
Following gene: 159899167
Centisome position: 53.65
GC content: 50.55
Gene sequence:
>726_bases ATGCAAACCACAGGTCATACAGTTTTAATTACGGGCGGCGCAGCCGGGATTGGCCGAGCCTTAGCCTTGCGTTTTGCTCA AGCAGGCAACCACGTGATTGCGGTTGGCCGCGATGCCCACAAATTGGCCGAACTCAAGGCAACTCAGCCAGCGATCACGA CAATTCAAGCTGATTTAGCTCAAGCTAGCGAGCGCCAACGCTTGGCCGAGCAAGTTTCCAATATCTCAATTTTAATTAAC AATGCTGGGGTGCAATATCATGGCGATTTGGTCGAGCAGCAATATGCCCAGGTTGAGCGTGACCAAGAAATTGCGATTAA TTTAACTGCGCCGATTGATTTGATTCAGCGCTTTTTGCCGACGCTGCAACAGCAACCAGAAGCGGCGATTATCAATGTTT CATCGGGCTTGGCCTTGGTTCCCAAGCAACAAGCACCGATTTATTGCGCGACTAAAGCTGGAATTCATATTTTTACCAAG GCGCTGCGCTGGCAATTAGAGCAAACGCGGGTGCGGGTGTTTGAGATTATTCCGCCATTGGTCGATACGGCGATGACTGC TGGCCGTGGTAAGGGCAAAATCAGCCCCGAAGCTTTGGTTGAGGAGTTTTGGCGGGGTTTTAGCCGCGATAAGTATCAAT TGGCAATTGGCAAGGTCAAGCTGTTAATTCAATTGCAGCGCTTTGTGCCAAGCGTGGCCGATCGTTTGATGCGCTATGGG CGGTAA
Upstream 100 bases:
>100_bases GTCGCCAATTGCGTGACGATTAACCTATGATAATGCGTGGCAAGCCGCTACCTGCTAGAGTAAGCGCAGGAAATTAAATT TATCTAGCGAGGTACCTTCA
Downstream 100 bases:
>100_bases TGCCCTCACCCCAACCCCTCTCCCGTCGAACGGGAGAGGGGCTTTTAATTCTGTGGCTCCCCTCGTCCACCGCAGTGTGT GAGGGGTTGAGGGCGAGGGA
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 241; Mature: 241
Protein sequence:
>241_residues MQTTGHTVLITGGAAGIGRALALRFAQAGNHVIAVGRDAHKLAELKATQPAITTIQADLAQASERQRLAEQVSNISILIN NAGVQYHGDLVEQQYAQVERDQEIAINLTAPIDLIQRFLPTLQQQPEAAIINVSSGLALVPKQQAPIYCATKAGIHIFTK ALRWQLEQTRVRVFEIIPPLVDTAMTAGRGKGKISPEALVEEFWRGFSRDKYQLAIGKVKLLIQLQRFVPSVADRLMRYG R
Sequences:
>Translated_241_residues MQTTGHTVLITGGAAGIGRALALRFAQAGNHVIAVGRDAHKLAELKATQPAITTIQADLAQASERQRLAEQVSNISILIN NAGVQYHGDLVEQQYAQVERDQEIAINLTAPIDLIQRFLPTLQQQPEAAIINVSSGLALVPKQQAPIYCATKAGIHIFTK ALRWQLEQTRVRVFEIIPPLVDTAMTAGRGKGKISPEALVEEFWRGFSRDKYQLAIGKVKLLIQLQRFVPSVADRLMRYG R >Mature_241_residues MQTTGHTVLITGGAAGIGRALALRFAQAGNHVIAVGRDAHKLAELKATQPAITTIQADLAQASERQRLAEQVSNISILIN NAGVQYHGDLVEQQYAQVERDQEIAINLTAPIDLIQRFLPTLQQQPEAAIINVSSGLALVPKQQAPIYCATKAGIHIFTK ALRWQLEQTRVRVFEIIPPLVDTAMTAGRGKGKISPEALVEEFWRGFSRDKYQLAIGKVKLLIQLQRFVPSVADRLMRYG R
Specific function: Unknown
COG id: COG3967
COG function: function code M; Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI4557649, Length=212, Percent_Identity=28.7735849056604, Blast_Score=84, Evalue=8e-17, Organism=Homo sapiens, GI142976729, Length=242, Percent_Identity=27.2727272727273, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI226371731, Length=196, Percent_Identity=29.5918367346939, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI7705855, Length=216, Percent_Identity=27.7777777777778, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI7705925, Length=189, Percent_Identity=30.1587301587302, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI31542939, Length=200, Percent_Identity=32, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI66933014, Length=204, Percent_Identity=30.3921568627451, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI40807363, Length=248, Percent_Identity=24.1935483870968, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI20149619, Length=199, Percent_Identity=27.1356783919598, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI25282469, Length=229, Percent_Identity=26.6375545851528, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI32483357, Length=190, Percent_Identity=27.3684210526316, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI1787820, Length=222, Percent_Identity=32.8828828828829, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI87082160, Length=189, Percent_Identity=28.042328042328, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI87082100, Length=214, Percent_Identity=31.3084112149533, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786701, Length=257, Percent_Identity=25.2918287937743, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786812, Length=188, Percent_Identity=28.7234042553192, Blast_Score=67, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17562990, Length=246, Percent_Identity=29.2682926829268, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI193204405, Length=251, Percent_Identity=31.4741035856574, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17562908, Length=251, Percent_Identity=28.2868525896414, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI115534694, Length=191, Percent_Identity=31.9371727748691, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17562904, Length=255, Percent_Identity=25.8823529411765, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI25147288, Length=211, Percent_Identity=28.436018957346, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17562906, Length=252, Percent_Identity=27.7777777777778, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17560150, Length=248, Percent_Identity=29.4354838709677, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17563726, Length=199, Percent_Identity=29.1457286432161, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193203117, Length=257, Percent_Identity=26.0700389105058, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193203115, Length=253, Percent_Identity=26.4822134387352, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17559104, Length=243, Percent_Identity=27.1604938271605, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI72000259, Length=214, Percent_Identity=27.5700934579439, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17560220, Length=208, Percent_Identity=33.1730769230769, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17558990, Length=232, Percent_Identity=27.5862068965517, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17531453, Length=247, Percent_Identity=28.7449392712551, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17551412, Length=246, Percent_Identity=26.8292682926829, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17538486, Length=202, Percent_Identity=29.2079207920792, Blast_Score=64, Evalue=7e-11, Organism=Caenorhabditis elegans, GI25152911, Length=204, Percent_Identity=28.4313725490196, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=230, Percent_Identity=33.4782608695652, Blast_Score=97, Evalue=3e-21, Organism=Drosophila melanogaster, GI24643142, Length=187, Percent_Identity=34.7593582887701, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI281364892, Length=200, Percent_Identity=29, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI23397609, Length=191, Percent_Identity=31.9371727748691, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI21358495, Length=267, Percent_Identity=25.4681647940075, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI24649181, Length=253, Percent_Identity=24.5059288537549, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI24644339, Length=203, Percent_Identity=30.5418719211823, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24651139, Length=192, Percent_Identity=30.2083333333333, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI161076933, Length=206, Percent_Identity=26.2135922330097, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24584748, Length=206, Percent_Identity=26.2135922330097, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24639444, Length=200, Percent_Identity=29.5, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24584744, Length=195, Percent_Identity=26.1538461538462, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI28574402, Length=195, Percent_Identity=26.1538461538462, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24640442, Length=209, Percent_Identity=24.4019138755981, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI116007236, Length=203, Percent_Identity=27.5862068965517, Blast_Score=64, Evalue=1e-10,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26506; Mature: 26506
Theoretical pI: Translated: 10.22; Mature: 10.22
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQTTGHTVLITGGAAGIGRALALRFAQAGNHVIAVGRDAHKLAELKATQPAITTIQADLA CCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCCCHHHHHHHHHH QASERQRLAEQVSNISILINNAGVQYHGDLVEQQYAQVERDQEIAINLTAPIDLIQRFLP HHHHHHHHHHHHCCEEEEEECCCCEECHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHH TLQQQPEAAIINVSSGLALVPKQQAPIYCATKAGIHIFTKALRWQLEQTRVRVFEIIPPL HHHCCCCEEEEEECCCEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VDTAMTAGRGKGKISPEALVEEFWRGFSRDKYQLAIGKVKLLIQLQRFVPSVADRLMRYG HHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCC R C >Mature Secondary Structure MQTTGHTVLITGGAAGIGRALALRFAQAGNHVIAVGRDAHKLAELKATQPAITTIQADLA CCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCCCHHHHHHHHHH QASERQRLAEQVSNISILINNAGVQYHGDLVEQQYAQVERDQEIAINLTAPIDLIQRFLP HHHHHHHHHHHHCCEEEEEECCCCEECHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHH TLQQQPEAAIINVSSGLALVPKQQAPIYCATKAGIHIFTKALRWQLEQTRVRVFEIIPPL HHHCCCCEEEEEECCCEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VDTAMTAGRGKGKISPEALVEEFWRGFSRDKYQLAIGKVKLLIQLQRFVPSVADRLMRYG HHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCC R C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7934828; 9384377; 7797557 [H]