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The map label for this gene is 159899072

Identifier: 159899072

GI number: 159899072

Start: 3280917

End: 3281606

Strand: Direct

Name: 159899072

Synonym: Haur_2553

Alternate gene names: NA

Gene position: 3280917-3281606 (Clockwise)

Preceding gene: 159899071

Following gene: 159899073

Centisome position: 51.7

GC content: 48.99

Gene sequence:

>690_bases
ATGTTTCCACTAGGCGACGATAACTCCAAACTACGGCGACGCGGCTATGTAACCTATGGCCTGATTGCCCTCAACGTGCT
GGTATTCTTATACGAATTTTCGTTGGGCAGCGAAAGCCAAGCCTTGCAAGATTTTATTATGACCTGGGGCGCAGTGCCCG
AACGGATCGCTGCTGGCGATGGCCTGATCACCTTATTGACTTCGATGTTTTTGCATGGTGGTTGGGCACACTTAATTGGT
AATATGCTGTTTCTGTTTGTTTTTGGTGATAATGTTGAAGATGCCTTTGGCCATGGCAAATACTTAGCTTTTTATCTAAT
TACTGGATTAATTGCCACGGCGGCACACATTCTGCTTAATCTCAATTCAGCCAGCGCTGGAATTCCCAGCGTCGGTGCAT
CAGGGGCAATTTCGGGCGTGCTCGGAGCCTATATCGTAATGTTTCGCAGCAATTCGGTCAAAGTATTGCTCGGACGTTTC
GTTCAAACGGTTCCAGCTTGGATGATGATTGGTTTATGGGCAGTACAGCAATTTGTTGCAACCTTTGCCACAATTACCAC
AACCAGCCAAACCAGCGGCGGTGTCGCCTATGCTGCTCACGCTGGCGGGTTTATCGCTGGGGTTGTACTTGGCTTTGTAC
TAAGCCGCATCCAACCAGCTCCGCAATTAGCCCAGCGCCGTAAAGCCTAA

Upstream 100 bases:

>100_bases
CAGCAGCAACGATCATACAGAAGATGGTGCAGCATCGCTCGATAAACAAGAATATTGGCAAAATGGTGCTGAAAAATATA
GCGTGTTATAGGGAGGGGCT

Downstream 100 bases:

>100_bases
TTAATATTGGAGGAATTGATAATGAGTAATCAAGAAAACAATCATGATGAACGCGGTTTTGGCGAAAAAGCCAAAGATTT
TATTCAAAATTTGTTTGATC

Product: rhomboid family protein

Products: NA

Alternate protein names: Integral Membrane Protein; Peptidase; Rhomboid-Like Protein; S54 Family Peptidase; Membrane-Associated Serine Protease; Peptidase Protein; Rhomboid Family Transmembrane Protein; LOW QUALITY PROTEIN Integral Membrane Protein; Transmembrane Rhomboid Family Protein; Small Hydrophobic Molecule Transporter Protein; Intramembrane Serine Protease; Subfamily; Rhomboid Serine Protease; Rhomboid Family Membrane Protein; Membrane Associated Serine Protease; Integral Membrane Rhomboid Family Protein; Regulatory Proteins IclR

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MFPLGDDNSKLRRRGYVTYGLIALNVLVFLYEFSLGSESQALQDFIMTWGAVPERIAAGDGLITLLTSMFLHGGWAHLIG
NMLFLFVFGDNVEDAFGHGKYLAFYLITGLIATAAHILLNLNSASAGIPSVGASGAISGVLGAYIVMFRSNSVKVLLGRF
VQTVPAWMMIGLWAVQQFVATFATITTTSQTSGGVAYAAHAGGFIAGVVLGFVLSRIQPAPQLAQRRKA

Sequences:

>Translated_229_residues
MFPLGDDNSKLRRRGYVTYGLIALNVLVFLYEFSLGSESQALQDFIMTWGAVPERIAAGDGLITLLTSMFLHGGWAHLIG
NMLFLFVFGDNVEDAFGHGKYLAFYLITGLIATAAHILLNLNSASAGIPSVGASGAISGVLGAYIVMFRSNSVKVLLGRF
VQTVPAWMMIGLWAVQQFVATFATITTTSQTSGGVAYAAHAGGFIAGVVLGFVLSRIQPAPQLAQRRKA
>Mature_229_residues
MFPLGDDNSKLRRRGYVTYGLIALNVLVFLYEFSLGSESQALQDFIMTWGAVPERIAAGDGLITLLTSMFLHGGWAHLIG
NMLFLFVFGDNVEDAFGHGKYLAFYLITGLIATAAHILLNLNSASAGIPSVGASGAISGVLGAYIVMFRSNSVKVLLGRF
VQTVPAWMMIGLWAVQQFVATFATITTTSQTSGGVAYAAHAGGFIAGVVLGFVLSRIQPAPQLAQRRKA

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24425; Mature: 24425

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFPLGDDNSKLRRRGYVTYGLIALNVLVFLYEFSLGSESQALQDFIMTWGAVPERIAAGD
CCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHCCC
GLITLLTSMFLHGGWAHLIGNMLFLFVFGDNVEDAFGHGKYLAFYLITGLIATAAHILLN
CHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
LNSASAGIPSVGASGAISGVLGAYIVMFRSNSVKVLLGRFVQTVPAWMMIGLWAVQQFVA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFATITTTSQTSGGVAYAAHAGGFIAGVVLGFVLSRIQPAPQLAQRRKA
HHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC
>Mature Secondary Structure
MFPLGDDNSKLRRRGYVTYGLIALNVLVFLYEFSLGSESQALQDFIMTWGAVPERIAAGD
CCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHCCC
GLITLLTSMFLHGGWAHLIGNMLFLFVFGDNVEDAFGHGKYLAFYLITGLIATAAHILLN
CHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
LNSASAGIPSVGASGAISGVLGAYIVMFRSNSVKVLLGRFVQTVPAWMMIGLWAVQQFVA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFATITTTSQTSGGVAYAAHAGGFIAGVVLGFVLSRIQPAPQLAQRRKA
HHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA