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The map label for this gene is rplY

Identifier: 159899066

GI number: 159899066

Start: 3273880

End: 3274479

Strand: Reverse

Name: rplY

Synonym: Haur_2547

Alternate gene names: 159899066

Gene position: 3274479-3273880 (Counterclockwise)

Preceding gene: 159899067

Following gene: 159899064

Centisome position: 51.59

GC content: 48.17

Gene sequence:

>600_bases
ATGGCGAACGAAACTCTACGGTTGGCACTCCAGCCGCGTGAAATTACCGGCAAAAAGGTTCAAAGCTTGCGCGACCAAGG
TATTTTGCCAATCGGTATTTGTGGCCGTGGGATCGAACCCTACTCAGCCCAAGTTGACGAACGTGAATTTAACAAAGTGA
TCAACCAAGCTGGCTATAGCGGCTTGATCGAGTTGAGCATCCCTGGCCAAAAACGCCAAGTTGCCTTCTTGTTGGAAGTC
CAACGCAACTCAGTCACCAATCGCATCATTCATGCCGACTTGCGGGTGGTTGATGCCAACGCACCAGTCGAATTGGATAT
TCACGTTGCTTTGCAAGGCGAAAACGATATGGTGAGCCGTGGCAACGCTGTATTGAACTTGGTTCAATCAGTGATTCGGG
TGCGAGCTTTGCCAGGCGATGTGCCACATCAAATTGATATTGATGCAAGCAGCCTGACCGAAATTGGTCAACAAATCTTG
GTTAAAGATTTGAGCTTGCCAGCTACCGTGGAAATTCTCGATGATGTTGAAACTTTGATTTTGACCTTGGGTTATCCACA
AGCTGAAGAAGCTCCAGCCGCTGAAACTGCTGCTGAATAA

Upstream 100 bases:

>100_bases
CGTTGGGTTGATTTTTTGCGTAACAACCTGTTTTATGGTACACTATCGCAGTTTTGCAGCGATCTAAGATTATTTTAACT
CTACATGGAGTAGCATAGCA

Downstream 100 bases:

>100_bases
TTAAATGCCCCTGTGGATTAATCCATAGGGGTTTTTTAAATCCAAAAAAAGGATGTGGTGTATGCCACATCCTTTTTTAA
TCTATTTAGCTTTTCTTTTT

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MANETLRLALQPREITGKKVQSLRDQGILPIGICGRGIEPYSAQVDEREFNKVINQAGYSGLIELSIPGQKRQVAFLLEV
QRNSVTNRIIHADLRVVDANAPVELDIHVALQGENDMVSRGNAVLNLVQSVIRVRALPGDVPHQIDIDASSLTEIGQQIL
VKDLSLPATVEILDDVETLILTLGYPQAEEAPAAETAAE

Sequences:

>Translated_199_residues
MANETLRLALQPREITGKKVQSLRDQGILPIGICGRGIEPYSAQVDEREFNKVINQAGYSGLIELSIPGQKRQVAFLLEV
QRNSVTNRIIHADLRVVDANAPVELDIHVALQGENDMVSRGNAVLNLVQSVIRVRALPGDVPHQIDIDASSLTEIGQQIL
VKDLSLPATVEILDDVETLILTLGYPQAEEAPAAETAAE
>Mature_198_residues
ANETLRLALQPREITGKKVQSLRDQGILPIGICGRGIEPYSAQVDEREFNKVINQAGYSGLIELSIPGQKRQVAFLLEVQ
RNSVTNRIIHADLRVVDANAPVELDIHVALQGENDMVSRGNAVLNLVQSVIRVRALPGDVPHQIDIDASSLTEIGQQILV
KDLSLPATVEILDDVETLILTLGYPQAEEAPAAETAAE

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL25_HERA2 (A9B076)

Other databases:

- EMBL:   CP000875
- RefSeq:   YP_001545313.1
- ProteinModelPortal:   A9B076
- SMR:   A9B076
- GeneID:   5734425
- GenomeReviews:   CP000875_GR
- KEGG:   hau:Haur_2547
- HOGENOM:   HBG731986
- OMA:   IARELTI
- ProtClustDB:   PRK05618
- BioCyc:   HAUR316274:HAUR_2547-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01334
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- Gene3D:   G3DSA:2.170.120.20
- ProDom:   PD012503
- TIGRFAMs:   TIGR00731

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 21628; Mature: 21497

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANETLRLALQPREITGKKVQSLRDQGILPIGICGRGIEPYSAQVDEREFNKVINQAGYS
CCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCC
GLIELSIPGQKRQVAFLLEVQRNSVTNRIIHADLRVVDANAPVELDIHVALQGENDMVSR
CEEEEECCCCCCEEEEEEEEHHCHHHHHEEEEEEEEEECCCCEEEEEEEEEECCCCHHHC
GNAVLNLVQSVIRVRALPGDVPHQIDIDASSLTEIGQQILVKDLSLPATVEILDDVETLI
CHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LTLGYPQAEEAPAAETAAE
HCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ANETLRLALQPREITGKKVQSLRDQGILPIGICGRGIEPYSAQVDEREFNKVINQAGYS
CCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCC
GLIELSIPGQKRQVAFLLEVQRNSVTNRIIHADLRVVDANAPVELDIHVALQGENDMVSR
CEEEEECCCCCCEEEEEEEEHHCHHHHHEEEEEEEEEECCCCEEEEEEEEEECCCCHHHC
GNAVLNLVQSVIRVRALPGDVPHQIDIDASSLTEIGQQILVKDLSLPATVEILDDVETLI
CHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LTLGYPQAEEAPAAETAAE
HCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA