| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159899056
Identifier: 159899056
GI number: 159899056
Start: 3242462
End: 3244876
Strand: Reverse
Name: 159899056
Synonym: Haur_2537
Alternate gene names: NA
Gene position: 3244876-3242462 (Counterclockwise)
Preceding gene: 159899057
Following gene: 159899055
Centisome position: 51.13
GC content: 50.23
Gene sequence:
>2415_bases ATGATTGCTTGGTGGCTAAGCATCGTTTTAATTGGAACTCTCGCGCTGCCTTTGAGTATGCGCCTATTTGGGCATTTGCC AGGGCGGGGCTTGGCATGGAGCAAAGCGCTAGGCTTGTTGGTTGTTGCATGGATCGCTTGGATGGGCGCTATGCTCAATC TTTCGGGCTTCGATGGCGTGACGGTTGGCTTGGGCTTAATTGGCTTGGGCACACTCGGTTGGTTTGTGCAACAACCTTTT GATAAAGCCCGTTTGTTGGCAGCAATTCGCCAATATTGGCCGCAATGGCTGGCCTATGAGTTGTTGTTTGCTTTGGTTTT TTTGCTGGGCATTCAATTGCGCTTCCATGGGATGTTTGGCTCAGGGATTCATGGCACCGAAAAACCAATGGAATCAATGC TGTTTAGCGCTGTGCTGAATAGTCCAAGCTATCCACCAAGCGATTTGTGGTTGGCCGGATTTAGCGTTAATTATTATTAT TTTGGCTATGTGCTGATCAGCGTATTGAGCGTGCTCAGTGGCGCGACGCTTGGCGAAACGTTTAATCTTGGTTTGGCCAC GATTATGGGCTTGGCCAGCCTTGGGATTGTTGGTTTAGTCACAACTATGGCGGGTTTGTGGTGGCGTGAGTATTTGCTAT CCCGTCTCCGATTAATCGCAATTGCTGCGCTTGGTTTGTTTGGTGGCGTATTGGTGCTGTTTGCAGGCAACCAAATTGGC GCTTTACAGAAGATCGTCAATTCTGCGGAAGTTAATCGACTAACCGATAGCCAACGGGTTTCAGTCTTGTGGCAAGCAAT TCAGGGGGTTGAGCCAGCCACGCTTGATCCCGCCACGCTAAAATCAGAAAATACTGGCATTTCTAAAAGCTCGACCTTGC CACCAATGGGCGAGAAATTTGAAGCTTGGCCATCGTCGCGTGCAATCTACGATGATCACGAAGAAACCATGATCATTGTC GATAATCAGCAACGTATGGGGATGTCTCAGCGTGAGATTATCACCGAGTTTCCCTTCTTCAGCTTTTATCTTGCCGATAT GCACCCGCATGTTTTGTCGATTCCGCTGACGTTGTTGGCGATTGCTTTGGCCTTGGCGATTTTTGTCCGGCCAGCGATGG TCCGTTTCCCAAAGCACGATTGGCTTGAATTGGCGATAGCTGGCTTGGTGATTGGCGGCTTATATGCAGCCAATTCGTGG GATGCCCCGACCTTTGGTGTGTTGTATGCCTTGGGTTTGGTTGGCTTGTGGCGTGGGCATACACCGCAACCAACCCGCCG CGATTGGCTACAGCTTGCAGGTCAAGTTGGTTTAGTGGTCTTGGCGGCGGCATTGTTGTATATGCCGTTCCTGCTCACAT TTAGCTCATTTGCAGGCCGCGATACCGTGCCCGACCCATTTGCCAGTATTCCAATTATTGGCAGCTTGGGCAAAATTATG GCTCCCGCCCGTGATCACTCTGGCTGGACTGATTTAGTGGCGATTTTTGGCTTGTTCTTAGTGCCGATTATTGCTTGGCT CAGCCGCACGATCAAGGTTTGGCAATTATGGGCTATGACTGGCGCGGTGCTGCTGATTGGCTTAATTGCCGGCATTCCGG CGATTGTCTTTTTGCCGATTGCCGTGATCTGTTGGCAAACAGCTTGGCAACGCAATCAGCGCGATGTGCAAAACTTTAGC TTGATCGTGGTTGGTTTGGCAGCCTTATTGATTGTAGTTGTCGATTTTCTGTATCTGCGTGACATTTTTGATAATCGCAT GAACACGGTTTTCAAGGTCTATTATCAGGCTTGGATGCTGTTGGGAATTGGTGCTGCTGCTAGTATTTGGGGCTTGTTGA GCAATGCCCAATGGCGACGCTGGACGAATGGCATTTGGTTGCCATTATTTGGGCTTTTGTTGGCTGGCGGCTTAGTCTAC CCAATTTCAGTGCTTAACCCTACAACTTCGCCCTCGTGGGATGCAAGTGGCTCGAAGCTTGATGCAGTAGAAAGTTCCCA ACACTTTTCCGAGCCAATGCGCAAAGCCGCTGCCTGGCTTGAAGCCAACACACCAAGCAACAGCGTTTTGGCGACTGCAC CTGGCAGCAGCTATCAAGATGGCGGTGAGTTAGCAACCTTGAGTGGTCGGCCAACCTTATTAGCTTGGCCCGGCTCGCAT GAAGGTTTATGGCGCAGCAAACAGCCTGATGCAAATCAGCAAGTGGCGCAACGCCAAGGCGATATCAGCGCAATTTACAA TGCCACCGATATCAATCAACTGCGCGAAGTTTTGGCTCGCCAGCGGGTCGATTATGTGGTGTGGGGGCCAAACGAGCAAA AAGCCTATCCACAGGCCAATATTGGCTTGCTCGAACAGGTTGCCAGCAAAGTTTACGAAGCCGATAGCTGGATCATCTAT CAAGTACAACCATAG
Upstream 100 bases:
>100_bases TCGCCGCGAATACGAAACCTATTTGAGTATTGCCCCGCCCGAGGGCTTGTGGGTAGGTTCGGCGCAGGAGCGCTTGAAGA ACCTGCCATAGTGAGTTGTT
Downstream 100 bases:
>100_bases GAGCAGACGATGCGCTTAACTGAACAATTACGCCAAGTTGGGCGTTGGCTGAGTATTGCTGGTGCTGTTTTGATCGCGCT TGGCCTGCTGTTTCTTGGCT
Product: hypothetical protein
Products: NA
Alternate protein names: Tetratricopeptide Repeat-Containing Protein; YYY Membrane Protein
Number of amino acids: Translated: 804; Mature: 804
Protein sequence:
>804_residues MIAWWLSIVLIGTLALPLSMRLFGHLPGRGLAWSKALGLLVVAWIAWMGAMLNLSGFDGVTVGLGLIGLGTLGWFVQQPF DKARLLAAIRQYWPQWLAYELLFALVFLLGIQLRFHGMFGSGIHGTEKPMESMLFSAVLNSPSYPPSDLWLAGFSVNYYY FGYVLISVLSVLSGATLGETFNLGLATIMGLASLGIVGLVTTMAGLWWREYLLSRLRLIAIAALGLFGGVLVLFAGNQIG ALQKIVNSAEVNRLTDSQRVSVLWQAIQGVEPATLDPATLKSENTGISKSSTLPPMGEKFEAWPSSRAIYDDHEETMIIV DNQQRMGMSQREIITEFPFFSFYLADMHPHVLSIPLTLLAIALALAIFVRPAMVRFPKHDWLELAIAGLVIGGLYAANSW DAPTFGVLYALGLVGLWRGHTPQPTRRDWLQLAGQVGLVVLAAALLYMPFLLTFSSFAGRDTVPDPFASIPIIGSLGKIM APARDHSGWTDLVAIFGLFLVPIIAWLSRTIKVWQLWAMTGAVLLIGLIAGIPAIVFLPIAVICWQTAWQRNQRDVQNFS LIVVGLAALLIVVVDFLYLRDIFDNRMNTVFKVYYQAWMLLGIGAAASIWGLLSNAQWRRWTNGIWLPLFGLLLAGGLVY PISVLNPTTSPSWDASGSKLDAVESSQHFSEPMRKAAAWLEANTPSNSVLATAPGSSYQDGGELATLSGRPTLLAWPGSH EGLWRSKQPDANQQVAQRQGDISAIYNATDINQLREVLARQRVDYVVWGPNEQKAYPQANIGLLEQVASKVYEADSWIIY QVQP
Sequences:
>Translated_804_residues MIAWWLSIVLIGTLALPLSMRLFGHLPGRGLAWSKALGLLVVAWIAWMGAMLNLSGFDGVTVGLGLIGLGTLGWFVQQPF DKARLLAAIRQYWPQWLAYELLFALVFLLGIQLRFHGMFGSGIHGTEKPMESMLFSAVLNSPSYPPSDLWLAGFSVNYYY FGYVLISVLSVLSGATLGETFNLGLATIMGLASLGIVGLVTTMAGLWWREYLLSRLRLIAIAALGLFGGVLVLFAGNQIG ALQKIVNSAEVNRLTDSQRVSVLWQAIQGVEPATLDPATLKSENTGISKSSTLPPMGEKFEAWPSSRAIYDDHEETMIIV DNQQRMGMSQREIITEFPFFSFYLADMHPHVLSIPLTLLAIALALAIFVRPAMVRFPKHDWLELAIAGLVIGGLYAANSW DAPTFGVLYALGLVGLWRGHTPQPTRRDWLQLAGQVGLVVLAAALLYMPFLLTFSSFAGRDTVPDPFASIPIIGSLGKIM APARDHSGWTDLVAIFGLFLVPIIAWLSRTIKVWQLWAMTGAVLLIGLIAGIPAIVFLPIAVICWQTAWQRNQRDVQNFS LIVVGLAALLIVVVDFLYLRDIFDNRMNTVFKVYYQAWMLLGIGAAASIWGLLSNAQWRRWTNGIWLPLFGLLLAGGLVY PISVLNPTTSPSWDASGSKLDAVESSQHFSEPMRKAAAWLEANTPSNSVLATAPGSSYQDGGELATLSGRPTLLAWPGSH EGLWRSKQPDANQQVAQRQGDISAIYNATDINQLREVLARQRVDYVVWGPNEQKAYPQANIGLLEQVASKVYEADSWIIY QVQP >Mature_804_residues MIAWWLSIVLIGTLALPLSMRLFGHLPGRGLAWSKALGLLVVAWIAWMGAMLNLSGFDGVTVGLGLIGLGTLGWFVQQPF DKARLLAAIRQYWPQWLAYELLFALVFLLGIQLRFHGMFGSGIHGTEKPMESMLFSAVLNSPSYPPSDLWLAGFSVNYYY FGYVLISVLSVLSGATLGETFNLGLATIMGLASLGIVGLVTTMAGLWWREYLLSRLRLIAIAALGLFGGVLVLFAGNQIG ALQKIVNSAEVNRLTDSQRVSVLWQAIQGVEPATLDPATLKSENTGISKSSTLPPMGEKFEAWPSSRAIYDDHEETMIIV DNQQRMGMSQREIITEFPFFSFYLADMHPHVLSIPLTLLAIALALAIFVRPAMVRFPKHDWLELAIAGLVIGGLYAANSW DAPTFGVLYALGLVGLWRGHTPQPTRRDWLQLAGQVGLVVLAAALLYMPFLLTFSSFAGRDTVPDPFASIPIIGSLGKIM APARDHSGWTDLVAIFGLFLVPIIAWLSRTIKVWQLWAMTGAVLLIGLIAGIPAIVFLPIAVICWQTAWQRNQRDVQNFS LIVVGLAALLIVVVDFLYLRDIFDNRMNTVFKVYYQAWMLLGIGAAASIWGLLSNAQWRRWTNGIWLPLFGLLLAGGLVY PISVLNPTTSPSWDASGSKLDAVESSQHFSEPMRKAAAWLEANTPSNSVLATAPGSSYQDGGELATLSGRPTLLAWPGSH EGLWRSKQPDANQQVAQRQGDISAIYNATDINQLREVLARQRVDYVVWGPNEQKAYPQANIGLLEQVASKVYEADSWIIY QVQP
Specific function: Unknown
COG id: COG5427
COG function: function code S; Uncharacterized membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 88285; Mature: 88285
Theoretical pI: Translated: 7.14; Mature: 7.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIAWWLSIVLIGTLALPLSMRLFGHLPGRGLAWSKALGLLVVAWIAWMGAMLNLSGFDGV CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCH TVGLGLIGLGTLGWFVQQPFDKARLLAAIRQYWPQWLAYELLFALVFLLGIQLRFHGMFG HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC SGIHGTEKPMESMLFSAVLNSPSYPPSDLWLAGFSVNYYYFGYVLISVLSVLSGATLGET CCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCCCCH FNLGLATIMGLASLGIVGLVTTMAGLWWREYLLSRLRLIAIAALGLFGGVLVLFAGNQIG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH ALQKIVNSAEVNRLTDSQRVSVLWQAIQGVEPATLDPATLKSENTGISKSSTLPPMGEKF HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCHH EAWPSSRAIYDDHEETMIIVDNQQRMGMSQREIITEFPFFSFYLADMHPHVLSIPLTLLA HCCCCCCCCCCCCCCEEEEEECHHHCCCHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHH IALALAIFVRPAMVRFPKHDWLELAIAGLVIGGLYAANSWDAPTFGVLYALGLVGLWRGH HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC TPQPTRRDWLQLAGQVGLVVLAAALLYMPFLLTFSSFAGRDTVPDPFASIPIIGSLGKIM CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH APARDHSGWTDLVAIFGLFLVPIIAWLSRTIKVWQLWAMTGAVLLIGLIAGIPAIVFLPI CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVICWQTAWQRNQRDVQNFSLIVVGLAALLIVVVDFLYLRDIFDNRMNTVFKVYYQAWML HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGIGAAASIWGLLSNAQWRRWTNGIWLPLFGLLLAGGLVYPISVLNPTTSPSWDASGSKL HHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCC DAVESSQHFSEPMRKAAAWLEANTPSNSVLATAPGSSYQDGGELATLSGRPTLLAWPGSH HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCEEEECCCCEEEECCCCC EGLWRSKQPDANQQVAQRQGDISAIYNATDINQLREVLARQRVDYVVWGPNEQKAYPQAN CCCCCCCCCCHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCC IGLLEQVASKVYEADSWIIYQVQP HHHHHHHHHHHHCCCCEEEEEECC >Mature Secondary Structure MIAWWLSIVLIGTLALPLSMRLFGHLPGRGLAWSKALGLLVVAWIAWMGAMLNLSGFDGV CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCH TVGLGLIGLGTLGWFVQQPFDKARLLAAIRQYWPQWLAYELLFALVFLLGIQLRFHGMFG HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC SGIHGTEKPMESMLFSAVLNSPSYPPSDLWLAGFSVNYYYFGYVLISVLSVLSGATLGET CCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCCCCH FNLGLATIMGLASLGIVGLVTTMAGLWWREYLLSRLRLIAIAALGLFGGVLVLFAGNQIG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH ALQKIVNSAEVNRLTDSQRVSVLWQAIQGVEPATLDPATLKSENTGISKSSTLPPMGEKF HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCHH EAWPSSRAIYDDHEETMIIVDNQQRMGMSQREIITEFPFFSFYLADMHPHVLSIPLTLLA HCCCCCCCCCCCCCCEEEEEECHHHCCCHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHH IALALAIFVRPAMVRFPKHDWLELAIAGLVIGGLYAANSWDAPTFGVLYALGLVGLWRGH HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC TPQPTRRDWLQLAGQVGLVVLAAALLYMPFLLTFSSFAGRDTVPDPFASIPIIGSLGKIM CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH APARDHSGWTDLVAIFGLFLVPIIAWLSRTIKVWQLWAMTGAVLLIGLIAGIPAIVFLPI CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVICWQTAWQRNQRDVQNFSLIVVGLAALLIVVVDFLYLRDIFDNRMNTVFKVYYQAWML HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGIGAAASIWGLLSNAQWRRWTNGIWLPLFGLLLAGGLVYPISVLNPTTSPSWDASGSKL HHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCC DAVESSQHFSEPMRKAAAWLEANTPSNSVLATAPGSSYQDGGELATLSGRPTLLAWPGSH HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCEEEECCCCEEEECCCCC EGLWRSKQPDANQQVAQRQGDISAIYNATDINQLREVLARQRVDYVVWGPNEQKAYPQAN CCCCCCCCCCHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCC IGLLEQVASKVYEADSWIIYQVQP HHHHHHHHHHHHCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA