Click here to switch to the map view.

The map label for this gene is glxA [H]

Identifier: 159898920

GI number: 159898920

Start: 3057084

End: 3058058

Strand: Direct

Name: glxA [H]

Synonym: Haur_2399

Alternate gene names: 159898920

Gene position: 3057084-3058058 (Clockwise)

Preceding gene: 159898910

Following gene: 159898921

Centisome position: 48.17

GC content: 48.72

Gene sequence:

>975_bases
ATGCAGGAATCGATCAGGCCAATCTATGTATTGCTCTTGCCGCATGTGCAATTGCTCGATTGCGCTGGCCCAAGCCAAGT
GTTTTTTGAGGCAATGTTGCAAGGCGCAAACTATCAATTAATATTTTGTGGTATAGATTCAGTCGTCACCAGTGCCCAAG
GTTTGGTACTACAAACCCAATCGGGCTTACCCGAAATCCAACCAGAAGCCACGATTTTGATTCCGGGGGTGCAGCTCGAT
TATTACGCCGATCTCAGTACTCCAATCGATCCAAAGATTACACATTGGCTGCAGGCTAGCGCTGCGGCTGGCTGTCGAAT
TGCCGCAATTTGTAGTGGCGCATTTGTGCTTGGCGAGGCAGGCCTGCTCGATAATCGCCCATGCACAACCCATTGGTCAG
CACTGGAATTATTACAACAACGCTATCCCAAAGCTCAAGTACGCCAAAATGTGTTATATATTCAAGCTGATCGAATTATC
ACCAGCGCTGGAATTAGCACAGGCATTGATCTGGCCTTGGCACTGGTTGAACAAGATTATGATGCGTTGTTGGTAGCGAA
AATCGCCCGCCAATTGGTGCTGTATCTGCGACGCAGCGGCCAGCAAACCCAGCACAGCGTCTATTTGCAATATCGCAACC
ATCTGCATATCGGAGTTCATCGGGTTCAAGACTATCTTGCCGAACATTTAGCCGAAACGATCAGCCTTGAACAACTGGCT
GCAATCGCCAAATTAAGTGTTCGCTCACTCAATCGGGCATTTCGCACCACGCTTGGCCTAACACCCATTAGCTATCAACA
ACAATTACGTTTAGAGCTAGCCGCCAATTTACTACATAACCCCGCTTGGAGCATTGAACACATCGCGCAGCAAGTTGGGT
TCAGCGATACTCGCCATTTTCGGCGGCTTTGGCAACGCTACTTTGGCACAAATCCCACCCAATCACGGCATACTCAGGAG
CCAAATCAATGCTAA

Upstream 100 bases:

>100_bases
CAAATCCGTCCGCTGATTGGCGCGATTGAGCCTTGTAGCACGGCTGATCGCTGGTTATGCTTATGGCCAGATTCTACCCA
ACTAGTCCGAAGGAGTCGCC

Downstream 100 bases:

>100_bases
AACGTCAGCTTACGCGCCTCGGTTATTTGCTGCTAGCTTGCCTACCGTTATTGTTAGCCGCCAGCATTGGCAGCTATTAT
TCAATGCAGGTGGCGATGAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MQESIRPIYVLLLPHVQLLDCAGPSQVFFEAMLQGANYQLIFCGIDSVVTSAQGLVLQTQSGLPEIQPEATILIPGVQLD
YYADLSTPIDPKITHWLQASAAAGCRIAAICSGAFVLGEAGLLDNRPCTTHWSALELLQQRYPKAQVRQNVLYIQADRII
TSAGISTGIDLALALVEQDYDALLVAKIARQLVLYLRRSGQQTQHSVYLQYRNHLHIGVHRVQDYLAEHLAETISLEQLA
AIAKLSVRSLNRAFRTTLGLTPISYQQQLRLELAANLLHNPAWSIEHIAQQVGFSDTRHFRRLWQRYFGTNPTQSRHTQE
PNQC

Sequences:

>Translated_324_residues
MQESIRPIYVLLLPHVQLLDCAGPSQVFFEAMLQGANYQLIFCGIDSVVTSAQGLVLQTQSGLPEIQPEATILIPGVQLD
YYADLSTPIDPKITHWLQASAAAGCRIAAICSGAFVLGEAGLLDNRPCTTHWSALELLQQRYPKAQVRQNVLYIQADRII
TSAGISTGIDLALALVEQDYDALLVAKIARQLVLYLRRSGQQTQHSVYLQYRNHLHIGVHRVQDYLAEHLAETISLEQLA
AIAKLSVRSLNRAFRTTLGLTPISYQQQLRLELAANLLHNPAWSIEHIAQQVGFSDTRHFRRLWQRYFGTNPTQSRHTQE
PNQC
>Mature_324_residues
MQESIRPIYVLLLPHVQLLDCAGPSQVFFEAMLQGANYQLIFCGIDSVVTSAQGLVLQTQSGLPEIQPEATILIPGVQLD
YYADLSTPIDPKITHWLQASAAAGCRIAAICSGAFVLGEAGLLDNRPCTTHWSALELLQQRYPKAQVRQNVLYIQADRII
TSAGISTGIDLALALVEQDYDALLVAKIARQLVLYLRRSGQQTQHSVYLQYRNHLHIGVHRVQDYLAEHLAETISLEQLA
AIAKLSVRSLNRAFRTTLGLTPISYQQQLRLELAANLLHNPAWSIEHIAQQVGFSDTRHFRRLWQRYFGTNPTQSRHTQE
PNQC

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=92, Percent_Identity=36.9565217391304, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36256; Mature: 36256

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQESIRPIYVLLLPHVQLLDCAGPSQVFFEAMLQGANYQLIFCGIDSVVTSAQGLVLQTQ
CCCCCCCEEEEECCCHHEECCCCHHHHHHHHHHCCCCEEEEEECHHHHHHCCCCEEEEEC
SGLPEIQPEATILIPGVQLDYYADLSTPIDPKITHWLQASAAAGCRIAAICSGAFVLGEA
CCCCCCCCCCEEEECCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEHHHCCHHEECCC
GLLDNRPCTTHWSALELLQQRYPKAQVRQNVLYIQADRIITSAGISTGIDLALALVEQDY
CCCCCCCCCCHHHHHHHHHHHCCHHHHHCCEEEEEECHHHHHCCCCHHHHHHHHHHHCCH
DALLVAKIARQLVLYLRRSGQQTQHSVYLQYRNHLHIGVHRVQDYLAEHLAETISLEQLA
HHHHHHHHHHHHHHHHHHCCCCHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AIAKLSVRSLNRAFRTTLGLTPISYQQQLRLELAANLLHNPAWSIEHIAQQVGFSDTRHF
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHH
RRLWQRYFGTNPTQSRHTQEPNQC
HHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQESIRPIYVLLLPHVQLLDCAGPSQVFFEAMLQGANYQLIFCGIDSVVTSAQGLVLQTQ
CCCCCCCEEEEECCCHHEECCCCHHHHHHHHHHCCCCEEEEEECHHHHHHCCCCEEEEEC
SGLPEIQPEATILIPGVQLDYYADLSTPIDPKITHWLQASAAAGCRIAAICSGAFVLGEA
CCCCCCCCCCEEEECCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEHHHCCHHEECCC
GLLDNRPCTTHWSALELLQQRYPKAQVRQNVLYIQADRIITSAGISTGIDLALALVEQDY
CCCCCCCCCCHHHHHHHHHHHCCHHHHHCCEEEEEECHHHHHCCCCHHHHHHHHHHHCCH
DALLVAKIARQLVLYLRRSGQQTQHSVYLQYRNHLHIGVHRVQDYLAEHLAETISLEQLA
HHHHHHHHHHHHHHHHHHCCCCHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AIAKLSVRSLNRAFRTTLGLTPISYQQQLRLELAANLLHNPAWSIEHIAQQVGFSDTRHF
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHH
RRLWQRYFGTNPTQSRHTQEPNQC
HHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]