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The map label for this gene is ygiS [H]

Identifier: 159898768

GI number: 159898768

Start: 2864289

End: 2865896

Strand: Reverse

Name: ygiS [H]

Synonym: Haur_2247

Alternate gene names: 159898768

Gene position: 2865896-2864289 (Counterclockwise)

Preceding gene: 159898769

Following gene: 159898767

Centisome position: 45.16

GC content: 50.12

Gene sequence:

>1608_bases
ATGGATAAACGTTTATCGATTTTAGGTCTCTTGCTACTGGTTTTAGTTGGCTGCGATCTTGGGAGCAACCAAGCTACCCC
AGCACCTGCATCAACTCCAGTAGCCCAAAGCCAAGCTGGTGGCGGCGGCAATTTTATTTTGACGCTTGGCGATGATCCAG
CGACGATCGACCCAGCATTGGTTGGCGATACGACCAGCGGTTTTATTGCCCGCTTGATGTTTAGCGGTTTGGTGACGCTC
AACAACGAGCTTGAAGCAGTCCCCGATTTAGCTGAAACGATCGATGTTTCGGCTGATGGCACGGTATATACCTTTAAACT
GCGCTCGAATGCACGCTTTGCCGATGGTACGCCGATTACTGCTGAAGATGTGCGTTGGAGTCTCGAACGGGCCACCGACC
CTAGCCTTGGCTCAATTGTTTCGCCAACCTACCTCGATGATGTTGCTGGAGTGCTTGAAAAAGTGACTGGGCAAGCCAAC
TCGCTCAGTGGGGTCAAGGTGGTTGATGATCAAACAATCGCGATTACGCTGCGCCAGCCAAGCTCGCTATTTTTGCTCAA
ATTGACTCACCCGCCAGCCTTTGTGCTCGATCGGCGCACAGTTGAGGACAATAGCGATTGGCTCGAAAAACCCAATGGCT
CAGGCCCGTTTATGCTCGATCTATGGAATCATCGCCGCCGCATGGAGCTTGTGCCCAACCCATACTACTATGGCACTGCC
CCCAAATTGGATCGGATTACCTATCTGATTGGGGCGGAAGGTAGTAATCCGCTGGGGTTGTATGAGCAGGGCGAAATCGA
CGTGACGGGCATTGGCAGCTATGATCTTGATCGGATTAATGATGAGGCTGATCCGTTGCACGCTGAGCTGCGGATCACGC
CACAGTTGCAATTAAGCTATATTGGCTTGAATGTGAATCAACCGCCATTTGACGATCCGAAGGTGCGCGAAGCCTTTTAT
TTGTTGATCGATCGGGTTAAATTGGCCGATGTTTCGTACAATGGCTCGGTGGTCGCAGCCCGGGGGATTTTGCCACCTGG
CATGCCTGGAGCCGAGCCAGAACGTTTGCCTGAGCCAAACGCCGATATTGCCCGTGCCAAACAACTAATCAGCGAATCGA
GCTATGGTAGCGTTGAAAAGTTTCCGCCGATTATTGGCTATAGCAGCGGTAGCGGGGTAGGTTTGCTGGCCCAAATTGCC
AAAGATGAGCTTGGGGTAACGATTGAAATTCGTGGTCAAGATCAATTTGGCGATTATTTGGCAGCACTTGAGCGCGATAA
TTATCATTTGTATGACCTCAGTTGGATCGCCGACTATCCCGATCCACAAAACTTTTTAGAGGTGTTGTTTGGCAGCAAGG
GTCAATACAATCGCACCAATTACAGCAACGCGAAGTTTGATCAACTGATTGAGCAAGCCAAAGCCGAGGCCGATGCTGAA
AAACGTGGGGCACTCTATCGCCAAGCCGAAGAGCAATTGCTCAGTGATTTTGTGGTCATTCCTTTGGTGCATACTGTTGA
TTATTCCTTGGTAAAATCGTATGTTGATGGTTACATGATTACGGCTTTGGGTGAGCTAGATTTAACTGGAGTTTCGCTCA
AACGCTAG

Upstream 100 bases:

>100_bases
AGCCCCTGAATAATGGCACGAAGGGCGTTCTTCGTGCCATTCGTGTGGATTATAATAGTTCAACCGTCGCTTGTGGACGG
GATCTGAGCGAGGAAGTGCT

Downstream 100 bases:

>100_bases
CGCTTGTGGGCTGATGCCCGTTTGGATAAGGAACTAAAATTATGCCAATTACTCCTCGCGCCTACAAAGGCATGCGCGAT
CACTTGCCCGAAGCTATGCG

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 535; Mature: 535

Protein sequence:

>535_residues
MDKRLSILGLLLLVLVGCDLGSNQATPAPASTPVAQSQAGGGGNFILTLGDDPATIDPALVGDTTSGFIARLMFSGLVTL
NNELEAVPDLAETIDVSADGTVYTFKLRSNARFADGTPITAEDVRWSLERATDPSLGSIVSPTYLDDVAGVLEKVTGQAN
SLSGVKVVDDQTIAITLRQPSSLFLLKLTHPPAFVLDRRTVEDNSDWLEKPNGSGPFMLDLWNHRRRMELVPNPYYYGTA
PKLDRITYLIGAEGSNPLGLYEQGEIDVTGIGSYDLDRINDEADPLHAELRITPQLQLSYIGLNVNQPPFDDPKVREAFY
LLIDRVKLADVSYNGSVVAARGILPPGMPGAEPERLPEPNADIARAKQLISESSYGSVEKFPPIIGYSSGSGVGLLAQIA
KDELGVTIEIRGQDQFGDYLAALERDNYHLYDLSWIADYPDPQNFLEVLFGSKGQYNRTNYSNAKFDQLIEQAKAEADAE
KRGALYRQAEEQLLSDFVVIPLVHTVDYSLVKSYVDGYMITALGELDLTGVSLKR

Sequences:

>Translated_535_residues
MDKRLSILGLLLLVLVGCDLGSNQATPAPASTPVAQSQAGGGGNFILTLGDDPATIDPALVGDTTSGFIARLMFSGLVTL
NNELEAVPDLAETIDVSADGTVYTFKLRSNARFADGTPITAEDVRWSLERATDPSLGSIVSPTYLDDVAGVLEKVTGQAN
SLSGVKVVDDQTIAITLRQPSSLFLLKLTHPPAFVLDRRTVEDNSDWLEKPNGSGPFMLDLWNHRRRMELVPNPYYYGTA
PKLDRITYLIGAEGSNPLGLYEQGEIDVTGIGSYDLDRINDEADPLHAELRITPQLQLSYIGLNVNQPPFDDPKVREAFY
LLIDRVKLADVSYNGSVVAARGILPPGMPGAEPERLPEPNADIARAKQLISESSYGSVEKFPPIIGYSSGSGVGLLAQIA
KDELGVTIEIRGQDQFGDYLAALERDNYHLYDLSWIADYPDPQNFLEVLFGSKGQYNRTNYSNAKFDQLIEQAKAEADAE
KRGALYRQAEEQLLSDFVVIPLVHTVDYSLVKSYVDGYMITALGELDLTGVSLKR
>Mature_535_residues
MDKRLSILGLLLLVLVGCDLGSNQATPAPASTPVAQSQAGGGGNFILTLGDDPATIDPALVGDTTSGFIARLMFSGLVTL
NNELEAVPDLAETIDVSADGTVYTFKLRSNARFADGTPITAEDVRWSLERATDPSLGSIVSPTYLDDVAGVLEKVTGQAN
SLSGVKVVDDQTIAITLRQPSSLFLLKLTHPPAFVLDRRTVEDNSDWLEKPNGSGPFMLDLWNHRRRMELVPNPYYYGTA
PKLDRITYLIGAEGSNPLGLYEQGEIDVTGIGSYDLDRINDEADPLHAELRITPQLQLSYIGLNVNQPPFDDPKVREAFY
LLIDRVKLADVSYNGSVVAARGILPPGMPGAEPERLPEPNADIARAKQLISESSYGSVEKFPPIIGYSSGSGVGLLAQIA
KDELGVTIEIRGQDQFGDYLAALERDNYHLYDLSWIADYPDPQNFLEVLFGSKGQYNRTNYSNAKFDQLIEQAKAEADAE
KRGALYRQAEEQLLSDFVVIPLVHTVDYSLVKSYVDGYMITALGELDLTGVSLKR

Specific function: Probably part of a binding-protein-dependent transport system [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1789397, Length=512, Percent_Identity=30.859375, Blast_Score=204, Evalue=1e-53,
Organism=Escherichia coli, GI1787495, Length=509, Percent_Identity=27.8978388998035, Blast_Score=188, Evalue=9e-49,
Organism=Escherichia coli, GI87081878, Length=538, Percent_Identity=27.5092936802974, Blast_Score=175, Evalue=8e-45,
Organism=Escherichia coli, GI1787052, Length=486, Percent_Identity=28.1893004115226, Blast_Score=174, Evalue=1e-44,
Organism=Escherichia coli, GI1789966, Length=478, Percent_Identity=25.9414225941423, Blast_Score=145, Evalue=6e-36,
Organism=Escherichia coli, GI1787762, Length=502, Percent_Identity=26.0956175298805, Blast_Score=145, Evalue=9e-36,
Organism=Escherichia coli, GI1787551, Length=553, Percent_Identity=25.3164556962025, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1789887, Length=461, Percent_Identity=22.3427331887202, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 58292; Mature: 58292

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKRLSILGLLLLVLVGCDLGSNQATPAPASTPVAQSQAGGGGNFILTLGDDPATIDPAL
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEE
VGDTTSGFIARLMFSGLVTLNNELEAVPDLAETIDVSADGTVYTFKLRSNARFADGTPIT
ECCCCHHHHHHHHHHHHEEECCCHHHCCCHHHHEECCCCCEEEEEEEECCCCCCCCCCCC
AEDVRWSLERATDPSLGSIVSPTYLDDVAGVLEKVTGQANSLSGVKVVDDQTIAITLRQP
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEEEECC
SSLFLLKLTHPPAFVLDRRTVEDNSDWLEKPNGSGPFMLDLWNHRRRMELVPNPYYYGTA
CCEEEEEECCCCCEEEECCCCCCCCHHHHCCCCCCCEEEEECCCCCEEEECCCCEECCCC
PKLDRITYLIGAEGSNPLGLYEQGEIDVTGIGSYDLDRINDEADPLHAELRITPQLQLSY
CCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHCCCCCCCEEEEEEECCEEEEEE
IGLNVNQPPFDDPKVREAFYLLIDRVKLADVSYNGSVVAARGILPPGMPGAEPERLPEPN
EEEECCCCCCCCHHHHHHHHHHHHHEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCC
ADIARAKQLISESSYGSVEKFPPIIGYSSGSGVGLLAQIAKDELGVTIEIRGQDQFGDYL
CHHHHHHHHHHCCCCCCHHHCCCEEEECCCCCCHHHHHHHHHHCCEEEEECCCCHHHHHH
AALERDNYHLYDLSWIADYPDPQNFLEVLFGSKGQYNRTNYSNAKFDQLIEQAKAEADAE
HHHCCCCEEEEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCHH
KRGALYRQAEEQLLSDFVVIPLVHTVDYSLVKSYVDGYMITALGELDLTGVSLKR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MDKRLSILGLLLLVLVGCDLGSNQATPAPASTPVAQSQAGGGGNFILTLGDDPATIDPAL
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEE
VGDTTSGFIARLMFSGLVTLNNELEAVPDLAETIDVSADGTVYTFKLRSNARFADGTPIT
ECCCCHHHHHHHHHHHHEEECCCHHHCCCHHHHEECCCCCEEEEEEEECCCCCCCCCCCC
AEDVRWSLERATDPSLGSIVSPTYLDDVAGVLEKVTGQANSLSGVKVVDDQTIAITLRQP
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEEEECC
SSLFLLKLTHPPAFVLDRRTVEDNSDWLEKPNGSGPFMLDLWNHRRRMELVPNPYYYGTA
CCEEEEEECCCCCEEEECCCCCCCCHHHHCCCCCCCEEEEECCCCCEEEECCCCEECCCC
PKLDRITYLIGAEGSNPLGLYEQGEIDVTGIGSYDLDRINDEADPLHAELRITPQLQLSY
CCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHCCCCCCCEEEEEEECCEEEEEE
IGLNVNQPPFDDPKVREAFYLLIDRVKLADVSYNGSVVAARGILPPGMPGAEPERLPEPN
EEEECCCCCCCCHHHHHHHHHHHHHEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCC
ADIARAKQLISESSYGSVEKFPPIIGYSSGSGVGLLAQIAKDELGVTIEIRGQDQFGDYL
CHHHHHHHHHHCCCCCCHHHCCCEEEECCCCCCHHHHHHHHHHCCEEEEECCCCHHHHHH
AALERDNYHLYDLSWIADYPDPQNFLEVLFGSKGQYNRTNYSNAKFDQLIEQAKAEADAE
HHHCCCCEEEEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCHH
KRGALYRQAEEQLLSDFVVIPLVHTVDYSLVKSYVDGYMITALGELDLTGVSLKR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]