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The map label for this gene is yddE [C]

Identifier: 159898761

GI number: 159898761

Start: 2856893

End: 2857792

Strand: Reverse

Name: yddE [C]

Synonym: Haur_2240

Alternate gene names: 159898761

Gene position: 2857792-2856893 (Counterclockwise)

Preceding gene: 159898762

Following gene: 159898760

Centisome position: 45.03

GC content: 52.56

Gene sequence:

>900_bases
ATGCCACGCTGGCGAGAAATTGTCCAAGTTGATGCGTTCGCCCATGTTCCGTTTACTGGTAATTCAGCGGCGGTATTGCT
CGATACTGCTGGGCTTGATCCGGTGGTGATGCAGCGTTTAGCCCGCGAGATGAATGTTTCTGAGACGGCATTTGTGTTGC
CCAGCAGCCAAGCCGATTTGCAATTGCGCTGGTTTACTCCAACGGTCGAAGTGCCCTTATGTGGTCATGCCACGGTTGCC
GCTTGCCATGCTTTGGCCGAACGCGGCCATTTAGTGATTCCTGGACGCTACCAAATTGAAACTGCTTCGGGGATTTTGGC
GGTCGAATTGCAAGAGAGCAAGACTTCGGCTTGTAAAGTTTGGTTGGATATTCCCGTGCCCGAATTTGAGCCGTTGGAAT
TGCAAATTGTGGCACTTACTGCCGCACTCGGTTTAGATGAAGCCGATATTCGCAGCGATATTCCGCCAACGCGCGGTGGC
AATTACGGCTATATTGGTTGTCATAATCTAGCGAATCTTTTGGCAATTAAGCCCAATATGAATGATGTGCGCTTTCTTTG
CCAAAGCCATGAACTGACGGCTTTGGTGCTCTACTGCCTCGAAGGGCTTGATGCTGAAAGTGCTGTGCATCTGCGCTTTT
TCGGTCCCGTGATTGGTATCGACGAAGACCCAGTGACTGGCTCGGCTCAAGGCCCGCTGGGTGCATTATTGGTTGGGGTG
GGCGCGATTGCCCAAGCCGATGGCAGCAATTTGGTGCAGTATCGCGCTGAACAAGGCGATGCAATGGGCCGCCCAGGCCG
TTTAGAAGTGGCAGTGCAGTTCGATCAAGAGGCCCAAATTATTAGCTCACGGATTGGCGGCGAGGCTTTGACGATTCTGC
GTGGCCATGTTTTTGCCTAG

Upstream 100 bases:

>100_bases
CAACATCAAAAATATATGTTTGAATAAAGCAATGGTAACCACAATGAGCAGCCATCGTGCTAGAATGAAGCTAGATTAAC
CCTAGTTTGAGGATCGTTCC

Downstream 100 bases:

>100_bases
AGGTGTGTTGGTGGAATATCAATTTCCCTGTGTGATTGATCGGGTTTCACGTGCCGAAGGGGTGTATATTGCGCCTCAAG
CCTTGGTTTGTGGCGCAGTC

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MPRWREIVQVDAFAHVPFTGNSAAVLLDTAGLDPVVMQRLAREMNVSETAFVLPSSQADLQLRWFTPTVEVPLCGHATVA
ACHALAERGHLVIPGRYQIETASGILAVELQESKTSACKVWLDIPVPEFEPLELQIVALTAALGLDEADIRSDIPPTRGG
NYGYIGCHNLANLLAIKPNMNDVRFLCQSHELTALVLYCLEGLDAESAVHLRFFGPVIGIDEDPVTGSAQGPLGALLVGV
GAIAQADGSNLVQYRAEQGDAMGRPGRLEVAVQFDQEAQIISSRIGGEALTILRGHVFA

Sequences:

>Translated_299_residues
MPRWREIVQVDAFAHVPFTGNSAAVLLDTAGLDPVVMQRLAREMNVSETAFVLPSSQADLQLRWFTPTVEVPLCGHATVA
ACHALAERGHLVIPGRYQIETASGILAVELQESKTSACKVWLDIPVPEFEPLELQIVALTAALGLDEADIRSDIPPTRGG
NYGYIGCHNLANLLAIKPNMNDVRFLCQSHELTALVLYCLEGLDAESAVHLRFFGPVIGIDEDPVTGSAQGPLGALLVGV
GAIAQADGSNLVQYRAEQGDAMGRPGRLEVAVQFDQEAQIISSRIGGEALTILRGHVFA
>Mature_298_residues
PRWREIVQVDAFAHVPFTGNSAAVLLDTAGLDPVVMQRLAREMNVSETAFVLPSSQADLQLRWFTPTVEVPLCGHATVAA
CHALAERGHLVIPGRYQIETASGILAVELQESKTSACKVWLDIPVPEFEPLELQIVALTAALGLDEADIRSDIPPTRGGN
YGYIGCHNLANLLAIKPNMNDVRFLCQSHELTALVLYCLEGLDAESAVHLRFFGPVIGIDEDPVTGSAQGPLGALLVGVG
AIAQADGSNLVQYRAEQGDAMGRPGRLEVAVQFDQEAQIISSRIGGEALTILRGHVFA

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=242, Percent_Identity=31.8181818181818, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI74316009, Length=242, Percent_Identity=31.8181818181818, Blast_Score=87, Evalue=2e-17,
Organism=Escherichia coli, GI1787737, Length=294, Percent_Identity=36.0544217687075, Blast_Score=139, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI17542160, Length=340, Percent_Identity=27.3529411764706, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17542154, Length=340, Percent_Identity=27.3529411764706, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17542158, Length=328, Percent_Identity=27.4390243902439, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17542152, Length=328, Percent_Identity=27.4390243902439, Blast_Score=80, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6321818, Length=303, Percent_Identity=24.7524752475248, Blast_Score=78, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 32051; Mature: 31920

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRWREIVQVDAFAHVPFTGNSAAVLLDTAGLDPVVMQRLAREMNVSETAFVLPSSQADL
CCCHHHHEEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCCE
QLRWFTPTVEVPLCGHATVAACHALAERGHLVIPGRYQIETASGILAVELQESKTSACKV
EEEEECCEEEEECCCCHHHHHHHHHHHCCCEEECCCEEEEECCCEEEEEEECCCCCEEEE
WLDIPVPEFEPLELQIVALTAALGLDEADIRSDIPPTRGGNYGYIGCHNLANLLAIKPNM
EEECCCCCCCCCEEEEEEEEEHHCCCHHHHHCCCCCCCCCCEEEEEHHCCCEEEEECCCC
NDVRFLCQSHELTALVLYCLEGLDAESAVHLRFFGPVIGIDEDPVTGSAQGPLGALLVGV
HHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEEECCEECCCCCCCCCCCCCCHHHHHHHH
GAIAQADGSNLVQYRAEQGDAMGRPGRLEVAVQFDQEAQIISSRIGGEALTILRGHVFA
HHHCCCCCCCCEEEEHHCCCCCCCCCEEEEEEEECCHHHHHHHHCCCCEEEEEECCCCC
>Mature Secondary Structure 
PRWREIVQVDAFAHVPFTGNSAAVLLDTAGLDPVVMQRLAREMNVSETAFVLPSSQADL
CCHHHHEEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCCE
QLRWFTPTVEVPLCGHATVAACHALAERGHLVIPGRYQIETASGILAVELQESKTSACKV
EEEEECCEEEEECCCCHHHHHHHHHHHCCCEEECCCEEEEECCCEEEEEEECCCCCEEEE
WLDIPVPEFEPLELQIVALTAALGLDEADIRSDIPPTRGGNYGYIGCHNLANLLAIKPNM
EEECCCCCCCCCEEEEEEEEEHHCCCHHHHHCCCCCCCCCCEEEEEHHCCCEEEEECCCC
NDVRFLCQSHELTALVLYCLEGLDAESAVHLRFFGPVIGIDEDPVTGSAQGPLGALLVGV
HHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEEECCEECCCCCCCCCCCCCCHHHHHHHH
GAIAQADGSNLVQYRAEQGDAMGRPGRLEVAVQFDQEAQIISSRIGGEALTILRGHVFA
HHHCCCCCCCCEEEEHHCCCCCCCCCEEEEEEEECCHHHHHHHHCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]