| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159898702
Identifier: 159898702
GI number: 159898702
Start: 2763374
End: 2765080
Strand: Reverse
Name: 159898702
Synonym: Haur_2181
Alternate gene names: NA
Gene position: 2765080-2763374 (Counterclockwise)
Preceding gene: 159898703
Following gene: 159898699
Centisome position: 43.57
GC content: 47.63
Gene sequence:
>1707_bases ATGTGGTTCATGAGTCAGCGGCGCTTCAAAATTATTATATGGCTCCTCTTTTTGCTCATCCTTGGTCAATGTGGCTGGTG GGGAGTTGGTCGGGTTGCCTGGCTTGTCGCTAGCTTCCAGCAAGGTGCCGACCCTGCTAGTGCCCTAAAATTGCCACCCA TGTTGCCGCCCGAAGCCGCAATCGCAACACAGTGGCTGCCTGACGACCCCGACACTGGTCGTGTGATGGAAGATTTTACT CGCCAACAACTGACCAGCGATTATGGTCGAGCGTGGCTCCAATGGAATCTTTCCTTGAAGATTGGCCGTCCCTACAATTT ACACACCAGTTTTAGTGGGCCAGCCTTGCATTATCTCACGACTAGTATCAGCACGACTGAGAATATAAAGATCGATCAAA TTGATACAGCCCACCAATTACAACTGCATTTCTATGCAGCAGATGGCTCAATTGTAGCTCTGACCGATACCCAAGCCGAG ATCTATCAGATGATCTATGATGCTGACGGGGAAATAGTATCGGCTCAATGGTTGTATGCACGCTATGAGATTGTGATGCT GTTGCAAGATGGCACATGGCGAATTCGGCATTGGGTTCGCCACGAACTGCCAACCCCGATAGAACCCTCGTATCAACCAA GGCCTCAACTGTTGCAGGTTAATCAGCAACAGTTACAACTTGCCGATCAGCCTTTTATCGCCCGAGGCGTTAATTATTAT CCTTCTAAAACTCCATGGCTACAATTTTGGCCTGCCTATCAACCCCAACAAACGACAAAAGATCTCGCGTTAGTTCAACA ACTAAATTTGAATAGTGTGCGGATTTTCATTCCGTTTGAGCAATTTACCGAACCCTATAGCACAAGTCTCTATCTACGTT CTGTGACCGATTTTCTGGATCAGGCTGATCAAGCGAACATCAAGGTCATTGTCACCTTATTCGATTTTTTAGGCGATTAT CAGCTGGCACGCTGGCAAGCAACCGACAGCTATTTAACAACCGTGGTAACTGCATTACGAGAACATCCGGCGATTATGGC ATGGGATGTTAAAAACGAGCCAGATCGTGATTATGCAACTGCTAGTCAGGTAGTGGTTGAGGCATGGCTCCAGCATAGCA TCCGCCAGCTTCGTCGGCTTGATCCCCATCATCTGATTACGATTGGCTGGTCTACACCTGAAGCTGCTGAACGGTTATAT CAAGATGTCGATTTGGTCTCGTTTCATTACTATGGATCAACTGAACTATTGGCAACCCACTATCAACGCCTCAGACAGGT AGTTGGCGAGAAACCGCTCCTGTTAACTGAGATTGGGATGCCAACCTGGAATAGCCCATTTTTTCCTCATGGCCACAACC AGCGTGAGCAAGCAAACTACTTAACGGGATTAATGCAACAAGCCGAAGCCTATAATGGTTTTTTGATCTGGACACTCTTC GATATTCCTGAGGTTCCAAAGGCTGTTGCTGGGTTTTGGCCATGGCAACGTGGCCCGCAAACCCAATTAGGACTCTATAA CGAGACCTATGAACCAAAATTAATCAGCAAAGTGTTGTTGGGGCTTGAGCCTAGCCCGTTTATTCGCTGGTGGGAGGCGT GGCTCAAGCCGTTTCGAATAACGCTTATCGTGCTAAGCATGCTTGGATTAATCGGAGGATGGCAGGGTTATCGCCGCTGG AAACGCAAAAAACACCCAAAGATTTAA
Upstream 100 bases:
>100_bases ATCCGGCGATCGTTGTTGCCAGCAGGTCGTTATACCCTGATCTGCCGGGTTGGCGATAAACAAGCCAAATTATTGCTGGT AGTTCCTTGATACAAATGAG
Downstream 100 bases:
>100_bases GGCAAAAGCGTTAATCGGATAATCGCCTGCCCTGAGCGCTGCATTGCCCGTTTGTTTACATCGGCAATCCATTTAATTAA AAGATTTGCTAATTTTGGGT
Product: putative glycosyl hydrolase
Products: NA
Alternate protein names: Glycosidase; Cellulase
Number of amino acids: Translated: 568; Mature: 568
Protein sequence:
>568_residues MWFMSQRRFKIIIWLLFLLILGQCGWWGVGRVAWLVASFQQGADPASALKLPPMLPPEAAIATQWLPDDPDTGRVMEDFT RQQLTSDYGRAWLQWNLSLKIGRPYNLHTSFSGPALHYLTTSISTTENIKIDQIDTAHQLQLHFYAADGSIVALTDTQAE IYQMIYDADGEIVSAQWLYARYEIVMLLQDGTWRIRHWVRHELPTPIEPSYQPRPQLLQVNQQQLQLADQPFIARGVNYY PSKTPWLQFWPAYQPQQTTKDLALVQQLNLNSVRIFIPFEQFTEPYSTSLYLRSVTDFLDQADQANIKVIVTLFDFLGDY QLARWQATDSYLTTVVTALREHPAIMAWDVKNEPDRDYATASQVVVEAWLQHSIRQLRRLDPHHLITIGWSTPEAAERLY QDVDLVSFHYYGSTELLATHYQRLRQVVGEKPLLLTEIGMPTWNSPFFPHGHNQREQANYLTGLMQQAEAYNGFLIWTLF DIPEVPKAVAGFWPWQRGPQTQLGLYNETYEPKLISKVLLGLEPSPFIRWWEAWLKPFRITLIVLSMLGLIGGWQGYRRW KRKKHPKI
Sequences:
>Translated_568_residues MWFMSQRRFKIIIWLLFLLILGQCGWWGVGRVAWLVASFQQGADPASALKLPPMLPPEAAIATQWLPDDPDTGRVMEDFT RQQLTSDYGRAWLQWNLSLKIGRPYNLHTSFSGPALHYLTTSISTTENIKIDQIDTAHQLQLHFYAADGSIVALTDTQAE IYQMIYDADGEIVSAQWLYARYEIVMLLQDGTWRIRHWVRHELPTPIEPSYQPRPQLLQVNQQQLQLADQPFIARGVNYY PSKTPWLQFWPAYQPQQTTKDLALVQQLNLNSVRIFIPFEQFTEPYSTSLYLRSVTDFLDQADQANIKVIVTLFDFLGDY QLARWQATDSYLTTVVTALREHPAIMAWDVKNEPDRDYATASQVVVEAWLQHSIRQLRRLDPHHLITIGWSTPEAAERLY QDVDLVSFHYYGSTELLATHYQRLRQVVGEKPLLLTEIGMPTWNSPFFPHGHNQREQANYLTGLMQQAEAYNGFLIWTLF DIPEVPKAVAGFWPWQRGPQTQLGLYNETYEPKLISKVLLGLEPSPFIRWWEAWLKPFRITLIVLSMLGLIGGWQGYRRW KRKKHPKI >Mature_568_residues MWFMSQRRFKIIIWLLFLLILGQCGWWGVGRVAWLVASFQQGADPASALKLPPMLPPEAAIATQWLPDDPDTGRVMEDFT RQQLTSDYGRAWLQWNLSLKIGRPYNLHTSFSGPALHYLTTSISTTENIKIDQIDTAHQLQLHFYAADGSIVALTDTQAE IYQMIYDADGEIVSAQWLYARYEIVMLLQDGTWRIRHWVRHELPTPIEPSYQPRPQLLQVNQQQLQLADQPFIARGVNYY PSKTPWLQFWPAYQPQQTTKDLALVQQLNLNSVRIFIPFEQFTEPYSTSLYLRSVTDFLDQADQANIKVIVTLFDFLGDY QLARWQATDSYLTTVVTALREHPAIMAWDVKNEPDRDYATASQVVVEAWLQHSIRQLRRLDPHHLITIGWSTPEAAERLY QDVDLVSFHYYGSTELLATHYQRLRQVVGEKPLLLTEIGMPTWNSPFFPHGHNQREQANYLTGLMQQAEAYNGFLIWTLF DIPEVPKAVAGFWPWQRGPQTQLGLYNETYEPKLISKVLLGLEPSPFIRWWEAWLKPFRITLIVLSMLGLIGGWQGYRRW KRKKHPKI
Specific function: Unknown
COG id: COG3934
COG function: function code G; Endo-beta-mannanase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66060; Mature: 66060
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWFMSQRRFKIIIWLLFLLILGQCGWWGVGRVAWLVASFQQGADPASALKLPPMLPPEAA CCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCHH IATQWLPDDPDTGRVMEDFTRQQLTSDYGRAWLQWNLSLKIGRPYNLHTSFSGPALHYLT HHHCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCEEECCCCCCCEEEEEE TSISTTENIKIDQIDTAHQLQLHFYAADGSIVALTDTQAEIYQMIYDADGEIVSAQWLYA ECCCCCCCEEEECCCCCEEEEEEEEECCCCEEEEECCHHHHHHHHHCCCCCEEEHHHHEE RYEIVMLLQDGTWRIRHWVRHELPTPIEPSYQPRPQLLQVNQQQLQLADQPFIARGVNYY EEEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCHHHHHHCCCCHHHCCCCCC PSKTPWLQFWPAYQPQQTTKDLALVQQLNLNSVRIFIPFEQFTEPYSTSLYLRSVTDFLD CCCCCCEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCHHHHHHHHHHHHH QADQANIKVIVTLFDFLGDYQLARWQATDSYLTTVVTALREHPAIMAWDVKNEPDRDYAT CCCCCCCEEHEEHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHH ASQVVVEAWLQHSIRQLRRLDPHHLITIGWSTPEAAERLYQDVDLVSFHYYGSTELLATH HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCEEEEEECCCHHHHHHH YQRLRQVVGEKPLLLTEIGMPTWNSPFFPHGHNQREQANYLTGLMQQAEAYNGFLIWTLF HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC DIPEVPKAVAGFWPWQRGPQTQLGLYNETYEPKLISKVLLGLEPSPFIRWWEAWLKPFRI CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH TLIVLSMLGLIGGWQGYRRWKRKKHPKI HHHHHHHHHHHCCHHHHHHHHHHCCCCC >Mature Secondary Structure MWFMSQRRFKIIIWLLFLLILGQCGWWGVGRVAWLVASFQQGADPASALKLPPMLPPEAA CCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCHH IATQWLPDDPDTGRVMEDFTRQQLTSDYGRAWLQWNLSLKIGRPYNLHTSFSGPALHYLT HHHCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCEEECCCCCCCEEEEEE TSISTTENIKIDQIDTAHQLQLHFYAADGSIVALTDTQAEIYQMIYDADGEIVSAQWLYA ECCCCCCCEEEECCCCCEEEEEEEEECCCCEEEEECCHHHHHHHHHCCCCCEEEHHHHEE RYEIVMLLQDGTWRIRHWVRHELPTPIEPSYQPRPQLLQVNQQQLQLADQPFIARGVNYY EEEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCHHHHHHCCCCHHHCCCCCC PSKTPWLQFWPAYQPQQTTKDLALVQQLNLNSVRIFIPFEQFTEPYSTSLYLRSVTDFLD CCCCCCEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCHHHHHHHHHHHHH QADQANIKVIVTLFDFLGDYQLARWQATDSYLTTVVTALREHPAIMAWDVKNEPDRDYAT CCCCCCCEEHEEHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHH ASQVVVEAWLQHSIRQLRRLDPHHLITIGWSTPEAAERLYQDVDLVSFHYYGSTELLATH HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCEEEEEECCCHHHHHHH YQRLRQVVGEKPLLLTEIGMPTWNSPFFPHGHNQREQANYLTGLMQQAEAYNGFLIWTLF HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC DIPEVPKAVAGFWPWQRGPQTQLGLYNETYEPKLISKVLLGLEPSPFIRWWEAWLKPFRI CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH TLIVLSMLGLIGGWQGYRRWKRKKHPKI HHHHHHHHHHHCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA