Click here to switch to the map view.

The map label for this gene is rfbC [H]

Identifier: 159898686

GI number: 159898686

Start: 2730886

End: 2732625

Strand: Reverse

Name: rfbC [H]

Synonym: Haur_2165

Alternate gene names: 159898686

Gene position: 2732625-2730886 (Counterclockwise)

Preceding gene: 159898687

Following gene: 159898685

Centisome position: 43.06

GC content: 48.1

Gene sequence:

>1740_bases
ATGCAAGTTTCTGAACATCCCCGCTTACGAATCGCGTGGTTGCTAACTGCGCCAATTGTCGGTTCTGGTGGATATACTAA
TATTTTTCGAATTATGAATCTCTTGGCGAGCTTTGGACACGAGCAAGTTATCTTTATGAACCCGCACGATTACCCAACCG
ATGCGCTTGATCGGCCTGAGCATTTTGTGCAACGCTATTTTGGCATGGTTCATGCGCCAATTTATTTCTGGCCCCAAGAT
ATTCGGGGTTTTGATGTGGTTTTAGCAACTCAATGGACGACCACAATGGGCTTTGAGATGTGTGATCCGACGATTCCACG
CGCCTACTTTGTGCAAGATTTTGAGCCATTTTTCTATGCCATGGGCGACGAATGGCTACGAGCTGAGGCAACGTATAAAC
AAGGTTGGCCATGTATTACTTTAGGTCATTGGCTGGCCAAGCATCTACACGAGCAATACAAGGCGACAACCTATCCGTTT
GATTTTGCAGTTGAACATGAGCGTTACTATCCGCGCCCACATTTGTTAACCAAAAAACCACGGGTTATTTTTTATGCCCG
GCCTTCAACGCCACGCCGTTGTTTCGATTTGGGGATGCGTGCCTTGGCGATTGTCAAAGAGCAACGGCCTGATGTAGAAA
TTGTGCTCTTTGGTGATAAACATCTGAGCCATCATTCTGCGCCGTTCAAATTTACGGCCATGGGCATTTTAAACCCCGAT
GAATTAGCGGAATTGTATGCTTCGGCAACCTTGGGCTTAGTTATTTCCTCAACCAACCCTTCGCTGATGCCACCAGAAAT
GATGGCCTCGGGTTGTCCAGTTGTTGATATTGACTTGGCTCCGAACCATTTCTTAGTAACCCATGGCAAAACTGGCTTAC
TCGCGACGGCTGAACCGAAACCATTGGCCGAAGCTTTATTAAATGTGCTCAACGACGAATCACTGCGCCAGCGCTTGATC
AAAGCTGGCTTGGAGCATGCCCAAACATTACGTTGGGAAAGCTCGGCGCGTGAGGTTGAAAAAGCCTTGTTGAAACTTGC
CACAACCGCCTCTGGCAGCCTGATCCAACGGCTCTTGACTGATCATGAACATCCCAATGGCGATGGAGTTACCGCCCCTT
TGACTGGCGATTTTCAAGTTGGGCAACGTTTGGTTTGTCAACACGATGGAGTCTGTGCTTTTGAGGTGGCCTTGGCTCAA
CCGGCAACTGGCCCTTGGCGCTTACAACTATACGATGCCTTGATCAATCCGAATCGTACCTTGGTTGATGTTACTTCAAG
CACAGTTAACCAACAATGGCTGCATTTCGAATTTCCGCCCTTGCCAGCGAGCCGCAACCAAGCCTTGCATTTTGTGCTGA
GCGCAACCAATGGTTCAAGCTTGCGCTTTGATTTCAAAGCATCAGCAAACGGTTCACTGAGTTTTAATGCAATGCCACAG
TTGGGGCAACTTTGCTGTCGCGTGTTATATCAACCTGCCTATGATTCAACTGAACCGAGTGTAACGCCCGATGTGGCCTA
CCTAACAACCCAAAAAGCCCTGATTAGTAGTGAATATATTCAATTAAGCGAATTTGCCGAACGGTTGCACAACTTGATTG
TGCCCAAAAAATCGTGGCAGGAGCGTGGTGCCAAAACATGGCGCATGCTACGCTCAGGAAATTTCAACGGTTTAGCTGCT
GAAGCCAAGCAATATGGCCGTTGGGTCTACGATCGAGCTAAACAGCAATTGCGGCGCTAG

Upstream 100 bases:

>100_bases
TCAGCTGCAACAGATTGCCAATGGTATCTTCATGCAGTTCAGCGGTAAAGCCAAAGGGCTATTACACCGTCTTATCAACC
GTAAAGGATAGAATCACCTT

Downstream 100 bases:

>100_bases
CATTAACCACACATCAGCGGAACTCAATGAGGAGCTTCGCTGGTGAATCCCACGTTGGGTGTAGAAGCAATACTTTAAGC
AGCAGCATATTTTGAATATT

Product: group 1 glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 579; Mature: 579

Protein sequence:

>579_residues
MQVSEHPRLRIAWLLTAPIVGSGGYTNIFRIMNLLASFGHEQVIFMNPHDYPTDALDRPEHFVQRYFGMVHAPIYFWPQD
IRGFDVVLATQWTTTMGFEMCDPTIPRAYFVQDFEPFFYAMGDEWLRAEATYKQGWPCITLGHWLAKHLHEQYKATTYPF
DFAVEHERYYPRPHLLTKKPRVIFYARPSTPRRCFDLGMRALAIVKEQRPDVEIVLFGDKHLSHHSAPFKFTAMGILNPD
ELAELYASATLGLVISSTNPSLMPPEMMASGCPVVDIDLAPNHFLVTHGKTGLLATAEPKPLAEALLNVLNDESLRQRLI
KAGLEHAQTLRWESSAREVEKALLKLATTASGSLIQRLLTDHEHPNGDGVTAPLTGDFQVGQRLVCQHDGVCAFEVALAQ
PATGPWRLQLYDALINPNRTLVDVTSSTVNQQWLHFEFPPLPASRNQALHFVLSATNGSSLRFDFKASANGSLSFNAMPQ
LGQLCCRVLYQPAYDSTEPSVTPDVAYLTTQKALISSEYIQLSEFAERLHNLIVPKKSWQERGAKTWRMLRSGNFNGLAA
EAKQYGRWVYDRAKQQLRR

Sequences:

>Translated_579_residues
MQVSEHPRLRIAWLLTAPIVGSGGYTNIFRIMNLLASFGHEQVIFMNPHDYPTDALDRPEHFVQRYFGMVHAPIYFWPQD
IRGFDVVLATQWTTTMGFEMCDPTIPRAYFVQDFEPFFYAMGDEWLRAEATYKQGWPCITLGHWLAKHLHEQYKATTYPF
DFAVEHERYYPRPHLLTKKPRVIFYARPSTPRRCFDLGMRALAIVKEQRPDVEIVLFGDKHLSHHSAPFKFTAMGILNPD
ELAELYASATLGLVISSTNPSLMPPEMMASGCPVVDIDLAPNHFLVTHGKTGLLATAEPKPLAEALLNVLNDESLRQRLI
KAGLEHAQTLRWESSAREVEKALLKLATTASGSLIQRLLTDHEHPNGDGVTAPLTGDFQVGQRLVCQHDGVCAFEVALAQ
PATGPWRLQLYDALINPNRTLVDVTSSTVNQQWLHFEFPPLPASRNQALHFVLSATNGSSLRFDFKASANGSLSFNAMPQ
LGQLCCRVLYQPAYDSTEPSVTPDVAYLTTQKALISSEYIQLSEFAERLHNLIVPKKSWQERGAKTWRMLRSGNFNGLAA
EAKQYGRWVYDRAKQQLRR
>Mature_579_residues
MQVSEHPRLRIAWLLTAPIVGSGGYTNIFRIMNLLASFGHEQVIFMNPHDYPTDALDRPEHFVQRYFGMVHAPIYFWPQD
IRGFDVVLATQWTTTMGFEMCDPTIPRAYFVQDFEPFFYAMGDEWLRAEATYKQGWPCITLGHWLAKHLHEQYKATTYPF
DFAVEHERYYPRPHLLTKKPRVIFYARPSTPRRCFDLGMRALAIVKEQRPDVEIVLFGDKHLSHHSAPFKFTAMGILNPD
ELAELYASATLGLVISSTNPSLMPPEMMASGCPVVDIDLAPNHFLVTHGKTGLLATAEPKPLAEALLNVLNDESLRQRLI
KAGLEHAQTLRWESSAREVEKALLKLATTASGSLIQRLLTDHEHPNGDGVTAPLTGDFQVGQRLVCQHDGVCAFEVALAQ
PATGPWRLQLYDALINPNRTLVDVTSSTVNQQWLHFEFPPLPASRNQALHFVLSATNGSSLRFDFKASANGSLSFNAMPQ
LGQLCCRVLYQPAYDSTEPSVTPDVAYLTTQKALISSEYIQLSEFAERLHNLIVPKKSWQERGAKTWRMLRSGNFNGLAA
EAKQYGRWVYDRAKQQLRR

Specific function: Involved in O-antigen biosynthesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00534 Glycos_transf_1; PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 65498; Mature: 65498

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVSEHPRLRIAWLLTAPIVGSGGYTNIFRIMNLLASFGHEQVIFMNPHDYPTDALDRPE
CCCCCCCCEEEEEEEECCEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHH
HFVQRYFGMVHAPIYFWPQDIRGFDVVLATQWTTTMGFEMCDPTIPRAYFVQDFEPFFYA
HHHHHHHHHHHCCEEECCCCCCCEEEEEEECCCHHCCCCCCCCCCCCCHHHCCCCHHHHH
MGDEWLRAEATYKQGWPCITLGHWLAKHLHEQYKATTYPFDFAVEHERYYPRPHLLTKKP
HCCHHHCCCCHHHCCCCEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCC
RVIFYARPSTPRRCFDLGMRALAIVKEQRPDVEIVLFGDKHLSHHSAPFKFTAMGILNPD
CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEEEECCCHH
ELAELYASATLGLVISSTNPSLMPPEMMASGCPVVDIDLAPNHFLVTHGKTGLLATAEPK
HHHHHHHHHEEEEEEECCCCCCCCHHHHHCCCCEEEEEECCCEEEEECCCCCEEEECCCC
PLAEALLNVLNDESLRQRLIKAGLEHAQTLRWESSAREVEKALLKLATTASGSLIQRLLT
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
DHEHPNGDGVTAPLTGDFQVGQRLVCQHDGVCAFEVALAQPATGPWRLQLYDALINPNRT
CCCCCCCCCEEECCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEEHHCCCCCE
LVDVTSSTVNQQWLHFEFPPLPASRNQALHFVLSATNGSSLRFDFKASANGSLSFNAMPQ
EEEECCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCEEECCCHH
LGQLCCRVLYQPAYDSTEPSVTPDVAYLTTQKALISSEYIQLSEFAERLHNLIVPKKSWQ
HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
ERGAKTWRMLRSGNFNGLAAEAKQYGRWVYDRAKQQLRR
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQVSEHPRLRIAWLLTAPIVGSGGYTNIFRIMNLLASFGHEQVIFMNPHDYPTDALDRPE
CCCCCCCCEEEEEEEECCEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHH
HFVQRYFGMVHAPIYFWPQDIRGFDVVLATQWTTTMGFEMCDPTIPRAYFVQDFEPFFYA
HHHHHHHHHHHCCEEECCCCCCCEEEEEEECCCHHCCCCCCCCCCCCCHHHCCCCHHHHH
MGDEWLRAEATYKQGWPCITLGHWLAKHLHEQYKATTYPFDFAVEHERYYPRPHLLTKKP
HCCHHHCCCCHHHCCCCEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCC
RVIFYARPSTPRRCFDLGMRALAIVKEQRPDVEIVLFGDKHLSHHSAPFKFTAMGILNPD
CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEEEECCCHH
ELAELYASATLGLVISSTNPSLMPPEMMASGCPVVDIDLAPNHFLVTHGKTGLLATAEPK
HHHHHHHHHEEEEEEECCCCCCCCHHHHHCCCCEEEEEECCCEEEEECCCCCEEEECCCC
PLAEALLNVLNDESLRQRLIKAGLEHAQTLRWESSAREVEKALLKLATTASGSLIQRLLT
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
DHEHPNGDGVTAPLTGDFQVGQRLVCQHDGVCAFEVALAQPATGPWRLQLYDALINPNRT
CCCCCCCCCEEECCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEEHHCCCCCE
LVDVTSSTVNQQWLHFEFPPLPASRNQALHFVLSATNGSSLRFDFKASANGSLSFNAMPQ
EEEECCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCEEECCCHH
LGQLCCRVLYQPAYDSTEPSVTPDVAYLTTQKALISSEYIQLSEFAERLHNLIVPKKSWQ
HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
ERGAKTWRMLRSGNFNGLAAEAKQYGRWVYDRAKQQLRR
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]