| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159898679
Identifier: 159898679
GI number: 159898679
Start: 2719882
End: 2722452
Strand: Reverse
Name: 159898679
Synonym: Haur_2158
Alternate gene names: NA
Gene position: 2722452-2719882 (Counterclockwise)
Preceding gene: 159898680
Following gene: 159898678
Centisome position: 42.9
GC content: 42.75
Gene sequence:
>2571_bases ATGACGCAATCAACTCTTCAATGGAACGACGCAGTGGTGCATGATCTGTTGCATTATCCTCAGCGGCTTTTACAGCACCA TGCTTGGTCGGCAGTGATCGCCGAGGCAGGCGGTTTACAGCAGATGCGTCAGCAATTGCTTGATTTTCCGCTAAAAGCCA AGGAACGGCGGGTTTTAGAAGTTATTTTGAACAACCCTGAAGATTCGGTGGTGCGCTACACCGACCTGCTAGCGATCCAT CATGCCACCTTTCATCGGCAGCAAAATGCCCTTTGTCGAAGTTTAAGTCAGTTTCTTAATACAGTGCAAGCTCCAGCTGA ACCGCAAGTGTTGGCTACTCCAGTGGCGAACCCAGTGAGTTTTGTGGTGCCATGGACGAGTTTTATTGGGCGACATGCGG CGTTAACGACCTTAAAGACGCTTTTAGCAGACGACCATCGCTGGATAACGTTAATTGGTGCTGGTGGCGTAGGCAAAACC CGCTTGGCGATGGAGTTGGCCCAACAGAGCATTGGTTCGTGCTGTGATGAAGTGCATATGCTACGCTTTGCCGATGTGCA ACGGGTTGAAGATGTGGGTTTGGCTTGTATCCAGCAATTGCAATTGGTCATTACGGAAGCCCAATCACTCGAGCAGACGC TGCAACAATTTTTTCAGCAACGGCGCAGCTTGGTGATCGTCGATAATTTGGAGCATATTCCAGCAGCAGGCTTGTGGCTT GCCCAAGTATTTCAAGCAGTACCGCAGCAACAGGTGATTGCAACGAGTCGGGTGCGCCTGAATGTACCCAACGAACAGCT TTATGAAGTTGCCGTATTGGATTGTCCTGCGGAAAAAGCTTCGTTCGAGCAGCTTAATCAATCGCCAGCAGTCCAATTGT GCCTTGATCGCATGGAAGCTGTGCGACTGGTGGATCGTACAAACCATCAATTGCTTGACCTTGTTGGCCAAATTTGTCGG CAGGTAGCAGGCCTGCCTTTAGCGATTGAGTTGGTTGCCGCTCGAACCGCCGAGTATTCCTTGGAAACGATTCTCGCAGC GATTACCACCGATCTTGAATTTATTGCTGAAGGCCCGCTGGATTTGGATGCGCGGCAGCAGACGATGGCTGCGACTATTG GTTGGAGCTATCAACTGTTGCCGGCTCAATCGCAACATATCATGCAGCAACTGGCGGTGTTTCGCGCCGGATGGGATGCA GCCGCAGCAGCGGCCATTTGTGGGCTTGAGCCTGAGTTGATGGAAGATCATCTAGCCTTATTATTGGATAACCACTTAAT TAGTTATCGCCTGGATTCTGAGCAGCAGCCATATACGATCTTAGAGCCAATTCGTCAATATGCTTGGCAATTATCGCCTG CTGAACAACAACACCAACTTCGTTCGCAGCATTGCGATTACTATATTATTTGGGTTGCACCAAGCGAGGAGATCATGCTT GGGCCGGATGCGGCATTTTGGCATTGTGCGTTCTTGCAATCGTACCCAAATGTGCAATTGGCCTTGCATACGGCCAAAGC CGATCCAACCCCGCGCCGTTTTTGGCAATTGCTGGGTTCGTTATATCGTTGTTGGTGGAATTTTCAATTAATTGCTGAAG CCCAATCATGGCTCGAACCCACAATTCCAGTGGTGCTGCAACCAACCAGCGAGCCATATCTGCAATGCCGTGTATTGTAT TCAATTTTGTTGTTTTGTGCTAAGGATACTGCAAGTTATTCGCGTTTGGCGACTTATCATTATTTAATTAACCTTGCTCA TCATAATCAATTCTATGTACTCGAAGCAAAAGCCAAAAATTTCTATGCTTTGATCTTAATGGAACAAAATAAATTAGTTG AAGCCGGTGATTTATTATTAGATGCAGCTACTATCTATCGCCAAATTGGCGATGAGGATAATTTTCTAACACCTATGCTG AATTATGCCAATCTTCTGTATAAAACAAAAAGATTTGAGCAAGCATGTGATATTTATGATGAATTAATAATTAAATTTGA GGCAATTAAAGACTATGATGGAATGTATTCGAGTATTAAGAATGTTGCTGTAATTTATGTTTGCCAAGAGAAATATTATG AAGCCGAGGAGAAATTTCTTTACCTCATTAAACAAGCTGAGGATCGGAAAAATATCGATATTTACCTTGGAGACTTCGAC ATTTATTTGCGATTAATTAAAATCTATTCTTTTTTAAGAAGAGCCGATGATATAGATATTTATGTGCATAAATTGTATCC TATATCGATGGGAAGTTTGTTTTTTATTGAACAAGTATTTACACTTTGTGAGACGATTATCTATATAGCTATATTTAAAG AATATTATTTAGTTGCATATTCAGCATATATATATCTCTTAAATATATTATATCTTGAACATTATGAAATGCGTTGGTAC GAATCTGAATTTCTAGAACGAACAAAAATTATTCTTAATCAATACTGTGAGGATTTTGATGCACTGATCGATGCTGATTT CTATTGGGATTTGAATAGTTTTAATGATACAATGAATTATTTTTTGCGAATAATCTATGGATTTCACTCAAACTCCTATA GTATTAATTGA
Upstream 100 bases:
>100_bases TAGGGCATTGGTATGCAATTCCAGGGAGTATCCAACGCTTTATCGCTGGTTAGTTAGGTTCGCCGCAGTTTCGCGCAGCA TGAAAGAATGAGATACCCCT
Downstream 100 bases:
>100_bases TGGAGATTGGAATACCTATGCCATTTACTGAAGAACAAATTGCAGATTTAATTTATGCACCGGAAAAAGTCATCGATCAA CCTCAAATTGCTCAACTGAT
Product: ATPase-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 856; Mature: 855
Protein sequence:
>856_residues MTQSTLQWNDAVVHDLLHYPQRLLQHHAWSAVIAEAGGLQQMRQQLLDFPLKAKERRVLEVILNNPEDSVVRYTDLLAIH HATFHRQQNALCRSLSQFLNTVQAPAEPQVLATPVANPVSFVVPWTSFIGRHAALTTLKTLLADDHRWITLIGAGGVGKT RLAMELAQQSIGSCCDEVHMLRFADVQRVEDVGLACIQQLQLVITEAQSLEQTLQQFFQQRRSLVIVDNLEHIPAAGLWL AQVFQAVPQQQVIATSRVRLNVPNEQLYEVAVLDCPAEKASFEQLNQSPAVQLCLDRMEAVRLVDRTNHQLLDLVGQICR QVAGLPLAIELVAARTAEYSLETILAAITTDLEFIAEGPLDLDARQQTMAATIGWSYQLLPAQSQHIMQQLAVFRAGWDA AAAAAICGLEPELMEDHLALLLDNHLISYRLDSEQQPYTILEPIRQYAWQLSPAEQQHQLRSQHCDYYIIWVAPSEEIML GPDAAFWHCAFLQSYPNVQLALHTAKADPTPRRFWQLLGSLYRCWWNFQLIAEAQSWLEPTIPVVLQPTSEPYLQCRVLY SILLFCAKDTASYSRLATYHYLINLAHHNQFYVLEAKAKNFYALILMEQNKLVEAGDLLLDAATIYRQIGDEDNFLTPML NYANLLYKTKRFEQACDIYDELIIKFEAIKDYDGMYSSIKNVAVIYVCQEKYYEAEEKFLYLIKQAEDRKNIDIYLGDFD IYLRLIKIYSFLRRADDIDIYVHKLYPISMGSLFFIEQVFTLCETIIYIAIFKEYYLVAYSAYIYLLNILYLEHYEMRWY ESEFLERTKIILNQYCEDFDALIDADFYWDLNSFNDTMNYFLRIIYGFHSNSYSIN
Sequences:
>Translated_856_residues MTQSTLQWNDAVVHDLLHYPQRLLQHHAWSAVIAEAGGLQQMRQQLLDFPLKAKERRVLEVILNNPEDSVVRYTDLLAIH HATFHRQQNALCRSLSQFLNTVQAPAEPQVLATPVANPVSFVVPWTSFIGRHAALTTLKTLLADDHRWITLIGAGGVGKT RLAMELAQQSIGSCCDEVHMLRFADVQRVEDVGLACIQQLQLVITEAQSLEQTLQQFFQQRRSLVIVDNLEHIPAAGLWL AQVFQAVPQQQVIATSRVRLNVPNEQLYEVAVLDCPAEKASFEQLNQSPAVQLCLDRMEAVRLVDRTNHQLLDLVGQICR QVAGLPLAIELVAARTAEYSLETILAAITTDLEFIAEGPLDLDARQQTMAATIGWSYQLLPAQSQHIMQQLAVFRAGWDA AAAAAICGLEPELMEDHLALLLDNHLISYRLDSEQQPYTILEPIRQYAWQLSPAEQQHQLRSQHCDYYIIWVAPSEEIML GPDAAFWHCAFLQSYPNVQLALHTAKADPTPRRFWQLLGSLYRCWWNFQLIAEAQSWLEPTIPVVLQPTSEPYLQCRVLY SILLFCAKDTASYSRLATYHYLINLAHHNQFYVLEAKAKNFYALILMEQNKLVEAGDLLLDAATIYRQIGDEDNFLTPML NYANLLYKTKRFEQACDIYDELIIKFEAIKDYDGMYSSIKNVAVIYVCQEKYYEAEEKFLYLIKQAEDRKNIDIYLGDFD IYLRLIKIYSFLRRADDIDIYVHKLYPISMGSLFFIEQVFTLCETIIYIAIFKEYYLVAYSAYIYLLNILYLEHYEMRWY ESEFLERTKIILNQYCEDFDALIDADFYWDLNSFNDTMNYFLRIIYGFHSNSYSIN >Mature_855_residues TQSTLQWNDAVVHDLLHYPQRLLQHHAWSAVIAEAGGLQQMRQQLLDFPLKAKERRVLEVILNNPEDSVVRYTDLLAIHH ATFHRQQNALCRSLSQFLNTVQAPAEPQVLATPVANPVSFVVPWTSFIGRHAALTTLKTLLADDHRWITLIGAGGVGKTR LAMELAQQSIGSCCDEVHMLRFADVQRVEDVGLACIQQLQLVITEAQSLEQTLQQFFQQRRSLVIVDNLEHIPAAGLWLA QVFQAVPQQQVIATSRVRLNVPNEQLYEVAVLDCPAEKASFEQLNQSPAVQLCLDRMEAVRLVDRTNHQLLDLVGQICRQ VAGLPLAIELVAARTAEYSLETILAAITTDLEFIAEGPLDLDARQQTMAATIGWSYQLLPAQSQHIMQQLAVFRAGWDAA AAAAICGLEPELMEDHLALLLDNHLISYRLDSEQQPYTILEPIRQYAWQLSPAEQQHQLRSQHCDYYIIWVAPSEEIMLG PDAAFWHCAFLQSYPNVQLALHTAKADPTPRRFWQLLGSLYRCWWNFQLIAEAQSWLEPTIPVVLQPTSEPYLQCRVLYS ILLFCAKDTASYSRLATYHYLINLAHHNQFYVLEAKAKNFYALILMEQNKLVEAGDLLLDAATIYRQIGDEDNFLTPMLN YANLLYKTKRFEQACDIYDELIIKFEAIKDYDGMYSSIKNVAVIYVCQEKYYEAEEKFLYLIKQAEDRKNIDIYLGDFDI YLRLIKIYSFLRRADDIDIYVHKLYPISMGSLFFIEQVFTLCETIIYIAIFKEYYLVAYSAYIYLLNILYLEHYEMRWYE SEFLERTKIILNQYCEDFDALIDADFYWDLNSFNDTMNYFLRIIYGFHSNSYSIN
Specific function: Unknown
COG id: COG3903
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000767 - InterPro: IPR016032 - InterPro: IPR011990 - InterPro: IPR000792 - InterPro: IPR011991 [H]
Pfam domain/function: PF00196 GerE [H]
EC number: NA
Molecular weight: Translated: 98764; Mature: 98633
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQSTLQWNDAVVHDLLHYPQRLLQHHAWSAVIAEAGGLQQMRQQLLDFPLKAKERRVLE CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHH VILNNPEDSVVRYTDLLAIHHATFHRQQNALCRSLSQFLNTVQAPAEPQVLATPVANPVS HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHH FVVPWTSFIGRHAALTTLKTLLADDHRWITLIGAGGVGKTRLAMELAQQSIGSCCDEVHM EEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH LRFADVQRVEDVGLACIQQLQLVITEAQSLEQTLQQFFQQRRSLVIVDNLEHIPAAGLWL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH AQVFQAVPQQQVIATSRVRLNVPNEQLYEVAVLDCPAEKASFEQLNQSPAVQLCLDRMEA HHHHHHCCHHHHHHHCEEEEECCCHHHEEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHH VRLVDRTNHQLLDLVGQICRQVAGLPLAIELVAARTAEYSLETILAAITTDLEFIAEGPL HHHHHCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DLDARQQTMAATIGWSYQLLPAQSQHIMQQLAVFRAGWDAAAAAAICGLEPELMEDHLAL CCCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH LLDNHLISYRLDSEQQPYTILEPIRQYAWQLSPAEQQHQLRSQHCDYYIIWVAPSEEIML HHHCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEECCCCEEE GPDAAFWHCAFLQSYPNVQLALHTAKADPTPRRFWQLLGSLYRCWWNFQLIAEAQSWLEP CCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TIPVVLQPTSEPYLQCRVLYSILLFCAKDTASYSRLATYHYLINLAHHNQFYVLEAKAKN CCCEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEECCEEEEEEECCCC FYALILMEQNKLVEAGDLLLDAATIYRQIGDEDNFLTPMLNYANLLYKTKRFEQACDIYD EEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH ELIIKFEAIKDYDGMYSSIKNVAVIYVCQEKYYEAEEKFLYLIKQAEDRKNIDIYLGDFD HHHHHHHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCEEEECCHH IYLRLIKIYSFLRRADDIDIYVHKLYPISMGSLFFIEQVFTLCETIIYIAIFKEYYLVAY HHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SAYIYLLNILYLEHYEMRWYESEFLERTKIILNQYCEDFDALIDADFYWDLNSFNDTMNY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHH FLRIIYGFHSNSYSIN HHHHHHHCCCCCCCCC >Mature Secondary Structure TQSTLQWNDAVVHDLLHYPQRLLQHHAWSAVIAEAGGLQQMRQQLLDFPLKAKERRVLE CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHH VILNNPEDSVVRYTDLLAIHHATFHRQQNALCRSLSQFLNTVQAPAEPQVLATPVANPVS HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHH FVVPWTSFIGRHAALTTLKTLLADDHRWITLIGAGGVGKTRLAMELAQQSIGSCCDEVHM EEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH LRFADVQRVEDVGLACIQQLQLVITEAQSLEQTLQQFFQQRRSLVIVDNLEHIPAAGLWL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH AQVFQAVPQQQVIATSRVRLNVPNEQLYEVAVLDCPAEKASFEQLNQSPAVQLCLDRMEA HHHHHHCCHHHHHHHCEEEEECCCHHHEEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHH VRLVDRTNHQLLDLVGQICRQVAGLPLAIELVAARTAEYSLETILAAITTDLEFIAEGPL HHHHHCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DLDARQQTMAATIGWSYQLLPAQSQHIMQQLAVFRAGWDAAAAAAICGLEPELMEDHLAL CCCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH LLDNHLISYRLDSEQQPYTILEPIRQYAWQLSPAEQQHQLRSQHCDYYIIWVAPSEEIML HHHCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEECCCCEEE GPDAAFWHCAFLQSYPNVQLALHTAKADPTPRRFWQLLGSLYRCWWNFQLIAEAQSWLEP CCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TIPVVLQPTSEPYLQCRVLYSILLFCAKDTASYSRLATYHYLINLAHHNQFYVLEAKAKN CCCEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEECCEEEEEEECCCC FYALILMEQNKLVEAGDLLLDAATIYRQIGDEDNFLTPMLNYANLLYKTKRFEQACDIYD EEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH ELIIKFEAIKDYDGMYSSIKNVAVIYVCQEKYYEAEEKFLYLIKQAEDRKNIDIYLGDFD HHHHHHHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCEEEECCHH IYLRLIKIYSFLRRADDIDIYVHKLYPISMGSLFFIEQVFTLCETIIYIAIFKEYYLVAY HHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SAYIYLLNILYLEHYEMRWYESEFLERTKIILNQYCEDFDALIDADFYWDLNSFNDTMNY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHH FLRIIYGFHSNSYSIN HHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]