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The map label for this gene is popC [H]

Identifier: 159898355

GI number: 159898355

Start: 2128839

End: 2130368

Strand: Direct

Name: popC [H]

Synonym: Haur_1831

Alternate gene names: 159898355

Gene position: 2128839-2130368 (Clockwise)

Preceding gene: 159898354

Following gene: 159898359

Centisome position: 33.54

GC content: 44.64

Gene sequence:

>1530_bases
ATGACCGAAGATTTCCTCCGCTACAATGATTGGCCCTTGGTTTTAGCAACTGCCCGTGACGAGCAATGGACGAACTTATT
GCTGAGCTGTTGTCCACTTGAAACAAACCCTGAACTTCTGAATCTCCTGGGCCAATGTCATAGCCTGAATAGCCTTGGTT
TATTTCAGTGTAAGTTAACCGAAGTACCAACAGTATTACGCCAGTTACCACTAAAGGTATTAAGCTTGAGTTGTAATAAC
TTACGCCAGTTACCCGATTGGTTAATTGAATTGCCGCTCGTTGAATTGTCGCTTTTTGGTTGCCCTCACGTTGAATTGCC
AGCAAATTTTGATCAAAGCTCAATCGAAATCCTCGATCTAAGCTCCAACGAAATGACCGAGTTGCCAGCTATTGTTAGGC
GCATGCCGAAATTGAAACAGCTTTTGTTGCGGGAGAATCATTTTCAGAGCATTCCCCGCCTGATTGCCGATACTGCCATC
GAACGGCTTGACTTGGCTGAAAACCCAATTCGCGATTTTCGTTTGCTTCCTGCTACCCGCTTACGCATTTTGAATCTTAG
CAACACTGGATTGACAATGCTGCCGATCGAGTTGCGTCAGCACCCACTCCAAGAGCTTGATCTTTCGAGGCTTGATGATT
TACATATTCCACCCTGGTTCGCAGAACTAAGCAGTCTTCGCATTTTAAATTTATTCTATAGCAACTTCTCTGAGCCAGAA
CTGCATCTGCCAACAAACTTGGCTGCTGTTTGGATGCAACATTGCAACTTAACCTCTATTCCTCAGGCGATTCAATCCAA
CCCGCAATTACGCTCGCTCAACCTTAGTGAAAACAATTTTGCCGATGCTGAGTTGGTGGTCAATGGCCCATGCGAATTTA
TCAACTTATCGGAATCATCGTTAGGTGAGCTTATTTTAGCCGATCACGCTCTATCAAGCCTTAAGAGTCTTGATCTTCAA
ATGGCAAACGTTAAGCAGGTTCGGAATTTAGCGAAGTGTCGAAATTTAGGCGGATTGCGTTGCGTTGATGCCTATTTACT
TGCAATGCCCACTACGCCTGAGTGGCTGAAGAGTCTTCGTTACTTGTGGCTCAATGGCGACTTTTCTAACGAACATATTC
CGTCGTGGTTTTGGCAGCTTGAGCAACTCCAATCACTCCATTTGCAATCGCCAGATTGGACACTGCTTGACCCGCGGATT
GGTCAATTGAGTGAACTCCAAGATTTGTCAATTTATAGTACACGGTTTGAGCATGTTCCAATCAGTTTATTACAATTAAC
CAAATTGCATAGGCTACAGCTGCATCTTGCAGATCCAAGCCATTTTAATTGGCTAGCAAGTTTGCCAGCATTACACGAGT
TGGGTTCGTATCCTTATGGTCAGAAACCACCGTTGGCGATTCAAGCACGAGCTGCTGACGCAGATTTTCGTTATCATAAC
CAATTTGCAGAGAGTAACGATGACGACGGGTTGTATCCTCATGCTGATTTGGCTTGGCTTGATCGGTATTTTCCCCAAAA
CGATCGTTAA

Upstream 100 bases:

>100_bases
ACGGAGCCTACGCCCAGTTGCAAGCCTTGCAAGCCTAAATAATCGCACCGCGCCCTGCAATCAAGGCCATTGCGGGGCGC
ATAAATTAAATGAGGGAAGC

Downstream 100 bases:

>100_bases
AAACCAACAGCGTAGCAACCCTAAACCCTTTAGTATGGCTACGCTATATGTTTCCACATCGGTGGAGTGTGTTCTTTCTG
ATTTCGTTGAAAGAACCCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 509; Mature: 508

Protein sequence:

>509_residues
MTEDFLRYNDWPLVLATARDEQWTNLLLSCCPLETNPELLNLLGQCHSLNSLGLFQCKLTEVPTVLRQLPLKVLSLSCNN
LRQLPDWLIELPLVELSLFGCPHVELPANFDQSSIEILDLSSNEMTELPAIVRRMPKLKQLLLRENHFQSIPRLIADTAI
ERLDLAENPIRDFRLLPATRLRILNLSNTGLTMLPIELRQHPLQELDLSRLDDLHIPPWFAELSSLRILNLFYSNFSEPE
LHLPTNLAAVWMQHCNLTSIPQAIQSNPQLRSLNLSENNFADAELVVNGPCEFINLSESSLGELILADHALSSLKSLDLQ
MANVKQVRNLAKCRNLGGLRCVDAYLLAMPTTPEWLKSLRYLWLNGDFSNEHIPSWFWQLEQLQSLHLQSPDWTLLDPRI
GQLSELQDLSIYSTRFEHVPISLLQLTKLHRLQLHLADPSHFNWLASLPALHELGSYPYGQKPPLAIQARAADADFRYHN
QFAESNDDDGLYPHADLAWLDRYFPQNDR

Sequences:

>Translated_509_residues
MTEDFLRYNDWPLVLATARDEQWTNLLLSCCPLETNPELLNLLGQCHSLNSLGLFQCKLTEVPTVLRQLPLKVLSLSCNN
LRQLPDWLIELPLVELSLFGCPHVELPANFDQSSIEILDLSSNEMTELPAIVRRMPKLKQLLLRENHFQSIPRLIADTAI
ERLDLAENPIRDFRLLPATRLRILNLSNTGLTMLPIELRQHPLQELDLSRLDDLHIPPWFAELSSLRILNLFYSNFSEPE
LHLPTNLAAVWMQHCNLTSIPQAIQSNPQLRSLNLSENNFADAELVVNGPCEFINLSESSLGELILADHALSSLKSLDLQ
MANVKQVRNLAKCRNLGGLRCVDAYLLAMPTTPEWLKSLRYLWLNGDFSNEHIPSWFWQLEQLQSLHLQSPDWTLLDPRI
GQLSELQDLSIYSTRFEHVPISLLQLTKLHRLQLHLADPSHFNWLASLPALHELGSYPYGQKPPLAIQARAADADFRYHN
QFAESNDDDGLYPHADLAWLDRYFPQNDR
>Mature_508_residues
TEDFLRYNDWPLVLATARDEQWTNLLLSCCPLETNPELLNLLGQCHSLNSLGLFQCKLTEVPTVLRQLPLKVLSLSCNNL
RQLPDWLIELPLVELSLFGCPHVELPANFDQSSIEILDLSSNEMTELPAIVRRMPKLKQLLLRENHFQSIPRLIADTAIE
RLDLAENPIRDFRLLPATRLRILNLSNTGLTMLPIELRQHPLQELDLSRLDDLHIPPWFAELSSLRILNLFYSNFSEPEL
HLPTNLAAVWMQHCNLTSIPQAIQSNPQLRSLNLSENNFADAELVVNGPCEFINLSESSLGELILADHALSSLKSLDLQM
ANVKQVRNLAKCRNLGGLRCVDAYLLAMPTTPEWLKSLRYLWLNGDFSNEHIPSWFWQLEQLQSLHLQSPDWTLLDPRIG
QLSELQDLSIYSTRFEHVPISLLQLTKLHRLQLHLADPSHFNWLASLPALHELGSYPYGQKPPLAIQARAADADFRYHNQ
FAESNDDDGLYPHADLAWLDRYFPQNDR

Specific function: Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway [H]

COG id: COG4886

COG function: function code S; Leucine-rich repeat (LRR) protein

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 22 LRR (leucine-rich) repeats [H]

Homologues:

Organism=Homo sapiens, GI55770895, Length=409, Percent_Identity=25.9168704156479, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI8923909, Length=409, Percent_Identity=25.9168704156479, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI16904383, Length=379, Percent_Identity=26.1213720316623, Blast_Score=70, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71991525, Length=414, Percent_Identity=28.0193236714976, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71991531, Length=414, Percent_Identity=28.0193236714976, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71981152, Length=456, Percent_Identity=26.5350877192982, Blast_Score=68, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI71981160, Length=425, Percent_Identity=26.8235294117647, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI221379725, Length=464, Percent_Identity=25, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI221379722, Length=464, Percent_Identity=25, Blast_Score=67, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001611 [H]

Pfam domain/function: PF00560 LRR_1 [H]

EC number: NA

Molecular weight: Translated: 58327; Mature: 58195

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEDFLRYNDWPLVLATARDEQWTNLLLSCCPLETNPELLNLLGQCHSLNSLGLFQCKLT
CCCCCCEECCCCEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEEEEHH
EVPTVLRQLPLKVLSLSCNNLRQLPDWLIELPLVELSLFGCPHVELPANFDQSSIEILDL
HHHHHHHHCCHHHHHHCHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCEEEEEC
SSNEMTELPAIVRRMPKLKQLLLRENHFQSIPRLIADTAIERLDLAENPIRDFRLLPATR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCE
LRILNLSNTGLTMLPIELRQHPLQELDLSRLDDLHIPPWFAELSSLRILNLFYSNFSEPE
EEEEEECCCCCEEEEHHHHHCCHHHHCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
LHLPTNLAAVWMQHCNLTSIPQAIQSNPQLRSLNLSENNFADAELVVNGPCEFINLSESS
EECCCHHHHHHHHHCCCCHHHHHHHCCCCEEEECCCCCCCCCCEEEECCCCCEEECCHHH
LGELILADHALSSLKSLDLQMANVKQVRNLAKCRNLGGLRCVDAYLLAMPTTPEWLKSLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCC
YLWLNGDFSNEHIPSWFWQLEQLQSLHLQSPDWTLLDPRIGQLSELQDLSIYSTRFEHVP
EEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCC
ISLLQLTKLHRLQLHLADPSHFNWLASLPALHELGSYPYGQKPPLAIQARAADADFRYHN
HHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHH
QFAESNDDDGLYPHADLAWLDRYFPQNDR
HHCCCCCCCCCCCCCHHHHHHHHCCCCCC
>Mature Secondary Structure 
TEDFLRYNDWPLVLATARDEQWTNLLLSCCPLETNPELLNLLGQCHSLNSLGLFQCKLT
CCCCCEECCCCEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEEEEHH
EVPTVLRQLPLKVLSLSCNNLRQLPDWLIELPLVELSLFGCPHVELPANFDQSSIEILDL
HHHHHHHHCCHHHHHHCHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCEEEEEC
SSNEMTELPAIVRRMPKLKQLLLRENHFQSIPRLIADTAIERLDLAENPIRDFRLLPATR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCE
LRILNLSNTGLTMLPIELRQHPLQELDLSRLDDLHIPPWFAELSSLRILNLFYSNFSEPE
EEEEEECCCCCEEEEHHHHHCCHHHHCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
LHLPTNLAAVWMQHCNLTSIPQAIQSNPQLRSLNLSENNFADAELVVNGPCEFINLSESS
EECCCHHHHHHHHHCCCCHHHHHHHCCCCEEEECCCCCCCCCCEEEECCCCCEEECCHHH
LGELILADHALSSLKSLDLQMANVKQVRNLAKCRNLGGLRCVDAYLLAMPTTPEWLKSLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCC
YLWLNGDFSNEHIPSWFWQLEQLQSLHLQSPDWTLLDPRIGQLSELQDLSIYSTRFEHVP
EEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCC
ISLLQLTKLHRLQLHLADPSHFNWLASLPALHELGSYPYGQKPPLAIQARAADADFRYHN
HHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHH
QFAESNDDDGLYPHADLAWLDRYFPQNDR
HHCCCCCCCCCCCCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10792715; 11823852 [H]