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The map label for this gene is xylA [H]

Identifier: 159898286

GI number: 159898286

Start: 2049721

End: 2050881

Strand: Direct

Name: xylA [H]

Synonym: Haur_1762

Alternate gene names: 159898286

Gene position: 2049721-2050881 (Clockwise)

Preceding gene: 159898282

Following gene: 159898287

Centisome position: 32.3

GC content: 51.16

Gene sequence:

>1161_bases
ATGTACGACGCACAGCCTGCCCACAAATTTACGTTTGGCCTTTGGACGGTCGGCAATGTTGGCCGTGATCCCTTTGGCGA
GCCAGTTCGTAAGCCGCTGAGTCCTCCTGAGATTGTCCATTTACTGGCAGAAGTTGGCGCTTGGGGCGTAAACTTCCACG
ATAACGATTTAATTCCAATTGATGCAACTCCCAGCGAACGCGACTCAATTATCAAGGCCTTTCGTGGCGCTTTAGCTGAA
ACCGGTCTCGTTGTGCCAATGGCAACTACCAACTTATTCAGTCATCCAGCTTTTAAAGATGGCGCGTTTACCAGCAATGA
TCCAGCAGTACGCGCCTATGCGCTGCAAAAAACCATGGCCGCGATGGATTTGGGAGCCGAATTTGGGGCCACGACCTATG
TATTTTGGGGTGGTCGCGAAGGCAGCGAAAGCGATGCCGCCAAAAATCCGCTTGAAGGCTTGAAGTGGTTTCGCGAGGCG
CTCAACTTTTTGTGTGAATATAGCTTGGCCCAAGGCTATAACTATCGCTTTGCCTTGGAAGCGAAGCCCAACGAACCACG
CGGCGACATCTTTTTGCCCACCACCGGAGCCATGTTGGGCTTTATCGAAACCCTCGATCATTCAGCAATGGTTGGGGTTA
ACCCTGAAGTAGCCCACGAAACCATGGCGGGCTTAAATTTTGCCCATGCTGTGGCCCAAGCGCTTGATGCTGGCAAACTT
TTCCACATCGACCTCAACGATCAAGCCAGTGGTCGCTATGATCAAGATTTCCGCTTTGCAGCGCATAACTACAAGCAAAA
TTTCTTCTTGGTCAAGTTGCTCGAAGATGTTGGCTATGATGGCCCACGCCACTTCGATGCCCATGCCTACCGCTCAGAAG
ATTTGCAAGGGGTCAAAGATTTTGCCCGTGGCTGTATTCGCAGCTATCTGATTTTGGCCGAAAAAGCCCGCCGCTTCAAC
GCTGATGCTGAAATTCAAGGTTTGTTGGCCGAATTGAAAACAGTTGAGCCAGCAGTGGCGGCGTTGGCTGGTAGCTATTC
GCCAGAACGAGTTGCCGCGCTCAAGGCGCATGAATTTGATCGGACGGGGCTGGGTGCACGCGGTTTGGGCTACGAAAAGC
TTGATCAATTGACATTTGAATTATTGATGGGTGTTCGTTAA

Upstream 100 bases:

>100_bases
CAGCGCCAAAAATGTGAAAATATTGGTAAATTTTCTGCAAGCGCTTACAGAAAATCTGATCAGTGAACGATCAACTCCAT
AGTACAAGGAGGTACCATTT

Downstream 100 bases:

>100_bases
GCTTTTAACCACGAAGAACACGAAGGCCACGAAGTTGCCTCGGTTGGTTTCTTCGTGGTTTATTTTATTGGAGCACCATC
ATGGCATATGTACTTGGTTA

Product: xylose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MYDAQPAHKFTFGLWTVGNVGRDPFGEPVRKPLSPPEIVHLLAEVGAWGVNFHDNDLIPIDATPSERDSIIKAFRGALAE
TGLVVPMATTNLFSHPAFKDGAFTSNDPAVRAYALQKTMAAMDLGAEFGATTYVFWGGREGSESDAAKNPLEGLKWFREA
LNFLCEYSLAQGYNYRFALEAKPNEPRGDIFLPTTGAMLGFIETLDHSAMVGVNPEVAHETMAGLNFAHAVAQALDAGKL
FHIDLNDQASGRYDQDFRFAAHNYKQNFFLVKLLEDVGYDGPRHFDAHAYRSEDLQGVKDFARGCIRSYLILAEKARRFN
ADAEIQGLLAELKTVEPAVAALAGSYSPERVAALKAHEFDRTGLGARGLGYEKLDQLTFELLMGVR

Sequences:

>Translated_386_residues
MYDAQPAHKFTFGLWTVGNVGRDPFGEPVRKPLSPPEIVHLLAEVGAWGVNFHDNDLIPIDATPSERDSIIKAFRGALAE
TGLVVPMATTNLFSHPAFKDGAFTSNDPAVRAYALQKTMAAMDLGAEFGATTYVFWGGREGSESDAAKNPLEGLKWFREA
LNFLCEYSLAQGYNYRFALEAKPNEPRGDIFLPTTGAMLGFIETLDHSAMVGVNPEVAHETMAGLNFAHAVAQALDAGKL
FHIDLNDQASGRYDQDFRFAAHNYKQNFFLVKLLEDVGYDGPRHFDAHAYRSEDLQGVKDFARGCIRSYLILAEKARRFN
ADAEIQGLLAELKTVEPAVAALAGSYSPERVAALKAHEFDRTGLGARGLGYEKLDQLTFELLMGVR
>Mature_386_residues
MYDAQPAHKFTFGLWTVGNVGRDPFGEPVRKPLSPPEIVHLLAEVGAWGVNFHDNDLIPIDATPSERDSIIKAFRGALAE
TGLVVPMATTNLFSHPAFKDGAFTSNDPAVRAYALQKTMAAMDLGAEFGATTYVFWGGREGSESDAAKNPLEGLKWFREA
LNFLCEYSLAQGYNYRFALEAKPNEPRGDIFLPTTGAMLGFIETLDHSAMVGVNPEVAHETMAGLNFAHAVAQALDAGKL
FHIDLNDQASGRYDQDFRFAAHNYKQNFFLVKLLEDVGYDGPRHFDAHAYRSEDLQGVKDFARGCIRSYLILAEKARRFN
ADAEIQGLLAELKTVEPAVAALAGSYSPERVAALKAHEFDRTGLGARGLGYEKLDQLTFELLMGVR

Specific function: Unknown

COG id: COG2115

COG function: function code G; Xylose isomerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xylose isomerase family [H]

Homologues:

Organism=Escherichia coli, GI1789988, Length=199, Percent_Identity=27.6381909547739, Blast_Score=92, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307
- InterPro:   IPR013453
- InterPro:   IPR001998 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: =5.3.1.5 [H]

Molecular weight: Translated: 42442; Mature: 42442

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: PS00173 XYLOSE_ISOMERASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYDAQPAHKFTFGLWTVGNVGRDPFGEPVRKPLSPPEIVHLLAEVGAWGVNFHDNDLIPI
CCCCCCCCEEEEEEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCCEEEC
DATPSERDSIIKAFRGALAETGLVVPMATTNLFSHPAFKDGAFTSNDPAVRAYALQKTMA
CCCCCHHHHHHHHHHHHHHHCCEEEEEEHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
AMDLGAEFGATTYVFWGGREGSESDAAKNPLEGLKWFREALNFLCEYSLAQGYNYRFALE
HHHHCCCCCCEEEEEECCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
AKPNEPRGDIFLPTTGAMLGFIETLDHSAMVGVNPEVAHETMAGLNFAHAVAQALDAGKL
CCCCCCCCCEEECCHHHHHHHHHHHCCCEEECCCHHHHHHHHHCCHHHHHHHHHHCCCCE
FHIDLNDQASGRYDQDFRFAAHNYKQNFFLVKLLEDVGYDGPRHFDAHAYRSEDLQGVKD
EEEECCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
FARGCIRSYLILAEKARRFNADAEIQGLLAELKTVEPAVAALAGSYSPERVAALKAHEFD
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
RTGLGARGLGYEKLDQLTFELLMGVR
CCCCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MYDAQPAHKFTFGLWTVGNVGRDPFGEPVRKPLSPPEIVHLLAEVGAWGVNFHDNDLIPI
CCCCCCCCEEEEEEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCCEEEC
DATPSERDSIIKAFRGALAETGLVVPMATTNLFSHPAFKDGAFTSNDPAVRAYALQKTMA
CCCCCHHHHHHHHHHHHHHHCCEEEEEEHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
AMDLGAEFGATTYVFWGGREGSESDAAKNPLEGLKWFREALNFLCEYSLAQGYNYRFALE
HHHHCCCCCCEEEEEECCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
AKPNEPRGDIFLPTTGAMLGFIETLDHSAMVGVNPEVAHETMAGLNFAHAVAQALDAGKL
CCCCCCCCCEEECCHHHHHHHHHHHCCCEEECCCHHHHHHHHHCCHHHHHHHHHHCCCCE
FHIDLNDQASGRYDQDFRFAAHNYKQNFFLVKLLEDVGYDGPRHFDAHAYRSEDLQGVKD
EEEECCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
FARGCIRSYLILAEKARRFNADAEIQGLLAELKTVEPAVAALAGSYSPERVAALKAHEFD
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
RTGLGARGLGYEKLDQLTFELLMGVR
CCCCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10089429; 10329168 [H]