Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159898202

Identifier: 159898202

GI number: 159898202

Start: 1947129

End: 1948136

Strand: Direct

Name: 159898202

Synonym: Haur_1678

Alternate gene names: NA

Gene position: 1947129-1948136 (Clockwise)

Preceding gene: 159898201

Following gene: 159898203

Centisome position: 30.68

GC content: 46.73

Gene sequence:

>1008_bases
ATGAAATTAATCAACCCAACACTTCCTCTATTTCAGAAGAGAGCGTTTGAATACTTTCCGCAGCAACTTTTATATCGAAT
TGCGCTGTATCCTGGCCAGCACGTGCGCCAGCTTAGCCTATGGATGCAAAAATGGTTACCAGTTGCGCCAACATATGAGG
TTGTGCAACAAGCAGTTACTGCTTGTTTGGAATGGTTTCTTGATCATGGAGATATTCAACGTGAATTTGGGGCGAGCTAT
CGCTGTATGCCGGCCTATGTTATTGGGGCCAGTAGCCTTAACCAGCCAAAATTGGTGATTTATGGCGACCCACGGATTGA
TCAGGAGCTTAAACGCCGATCATTCTCGCTTGTCCAACGCCTGATTTATCAACACACTCATTCACCGTATCCTTGTGGGT
ATGAGCGGCGTGTGATTGGGCTTGATTCGGCCAATCACCAATTAATCAAACAAACTCTACCTTGGTTGGAGCTTGCGACC
CTGACGCAGGCACTGCCATCAATTGCTGAACTTGAGGTGCCTGATCCGCAAAAGGCTCGCGCCCTAACGGTTGAAGGTGT
TTTTGAGATATATGATCCGCAATTTGCCCAGCAGCCGTTTTATCAAGCCTGGCGTTTAAAAGAACAAACCAACCGCCGCC
TAAACTGCCTTGTGCGATGGCGACCAACTGTGGATAGCCCCGCCTACTTGACTCGTTATTATTACCAACACTATCCCGAT
GCACTTAGCGCTTTAGAGTATGACTATGCGGTGTTATGGCGTTGGAAAATTGATGCCCAAACTTTCCCGCGCCAAGCACG
ATGGGTTGAGAAACTCGCACATTTGCAAATTCCTAAAGGCTTGCCTGCCCAATATTGGCAATGGTTGCAATTTCTTATCA
CTGAACAACCAAGCGCTGATGGCGATTATTGGCGCTTGAAATTGCCCTTGGAATTGTGTGATGAAGTTCGTGATGTATTA
ACAACCCGATTAGGAATTCAATGGCGCACGACAATTAATCAAGCTTAG

Upstream 100 bases:

>100_bases
AGGCCGCCCAACCGACACTTCCATCAACCTGTCAGCGTCTCTTTTTAGCCTATGCCCGAGCATTGGAACTCGTGCTGACT
CGGATTAAGGAGTTGATTGG

Downstream 100 bases:

>100_bases
GCCAATCACGTCTTTGGATCTAAGGAGCTGTATTAATGTATAGTCCAGCATTTGTTGAACAAGAACTCTTGGAAATAGTA
AGTGTATCCCTTGAAACCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MKLINPTLPLFQKRAFEYFPQQLLYRIALYPGQHVRQLSLWMQKWLPVAPTYEVVQQAVTACLEWFLDHGDIQREFGASY
RCMPAYVIGASSLNQPKLVIYGDPRIDQELKRRSFSLVQRLIYQHTHSPYPCGYERRVIGLDSANHQLIKQTLPWLELAT
LTQALPSIAELEVPDPQKARALTVEGVFEIYDPQFAQQPFYQAWRLKEQTNRRLNCLVRWRPTVDSPAYLTRYYYQHYPD
ALSALEYDYAVLWRWKIDAQTFPRQARWVEKLAHLQIPKGLPAQYWQWLQFLITEQPSADGDYWRLKLPLELCDEVRDVL
TTRLGIQWRTTINQA

Sequences:

>Translated_335_residues
MKLINPTLPLFQKRAFEYFPQQLLYRIALYPGQHVRQLSLWMQKWLPVAPTYEVVQQAVTACLEWFLDHGDIQREFGASY
RCMPAYVIGASSLNQPKLVIYGDPRIDQELKRRSFSLVQRLIYQHTHSPYPCGYERRVIGLDSANHQLIKQTLPWLELAT
LTQALPSIAELEVPDPQKARALTVEGVFEIYDPQFAQQPFYQAWRLKEQTNRRLNCLVRWRPTVDSPAYLTRYYYQHYPD
ALSALEYDYAVLWRWKIDAQTFPRQARWVEKLAHLQIPKGLPAQYWQWLQFLITEQPSADGDYWRLKLPLELCDEVRDVL
TTRLGIQWRTTINQA
>Mature_335_residues
MKLINPTLPLFQKRAFEYFPQQLLYRIALYPGQHVRQLSLWMQKWLPVAPTYEVVQQAVTACLEWFLDHGDIQREFGASY
RCMPAYVIGASSLNQPKLVIYGDPRIDQELKRRSFSLVQRLIYQHTHSPYPCGYERRVIGLDSANHQLIKQTLPWLELAT
LTQALPSIAELEVPDPQKARALTVEGVFEIYDPQFAQQPFYQAWRLKEQTNRRLNCLVRWRPTVDSPAYLTRYYYQHYPD
ALSALEYDYAVLWRWKIDAQTFPRQARWVEKLAHLQIPKGLPAQYWQWLQFLITEQPSADGDYWRLKLPLELCDEVRDVL
TTRLGIQWRTTINQA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39631; Mature: 39631

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLINPTLPLFQKRAFEYFPQQLLYRIALYPGQHVRQLSLWMQKWLPVAPTYEVVQQAVT
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
ACLEWFLDHGDIQREFGASYRCMPAYVIGASSLNQPKLVIYGDPRIDQELKRRSFSLVQR
HHHHHHHCCCCHHHHHCCCCEECCEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
LIYQHTHSPYPCGYERRVIGLDSANHQLIKQTLPWLELATLTQALPSIAELEVPDPQKAR
HHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHCCHHHHHHHHHHCCHHHHCCCCCCCHHH
ALTVEGVFEIYDPQFAQQPFYQAWRLKEQTNRRLNCLVRWRPTVDSPAYLTRYYYQHYPD
EEEHHHHHHHCCCHHHCCHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHCHH
ALSALEYDYAVLWRWKIDAQTFPRQARWVEKLAHLQIPKGLPAQYWQWLQFLITEQPSAD
HHHHHCCCEEEEEEEEECHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCC
GDYWRLKLPLELCDEVRDVLTTRLGIQWRTTINQA
CCEEEEEECHHHHHHHHHHHHHHHCCEEECCCCCC
>Mature Secondary Structure
MKLINPTLPLFQKRAFEYFPQQLLYRIALYPGQHVRQLSLWMQKWLPVAPTYEVVQQAVT
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
ACLEWFLDHGDIQREFGASYRCMPAYVIGASSLNQPKLVIYGDPRIDQELKRRSFSLVQR
HHHHHHHCCCCHHHHHCCCCEECCEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
LIYQHTHSPYPCGYERRVIGLDSANHQLIKQTLPWLELATLTQALPSIAELEVPDPQKAR
HHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHCCHHHHHHHHHHCCHHHHCCCCCCCHHH
ALTVEGVFEIYDPQFAQQPFYQAWRLKEQTNRRLNCLVRWRPTVDSPAYLTRYYYQHYPD
EEEHHHHHHHCCCHHHCCHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHCHH
ALSALEYDYAVLWRWKIDAQTFPRQARWVEKLAHLQIPKGLPAQYWQWLQFLITEQPSAD
HHHHHCCCEEEEEEEEECHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCC
GDYWRLKLPLELCDEVRDVLTTRLGIQWRTTINQA
CCEEEEEECHHHHHHHHHHHHHHHCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA