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The map label for this gene is yhdW [H]

Identifier: 159898176

GI number: 159898176

Start: 1919606

End: 1920349

Strand: Direct

Name: yhdW [H]

Synonym: Haur_1652

Alternate gene names: 159898176

Gene position: 1919606-1920349 (Clockwise)

Preceding gene: 159898170

Following gene: 159898183

Centisome position: 30.25

GC content: 50.94

Gene sequence:

>744_bases
GTGTTACAGCCGTTTGGCGCACGCAAAGGGCCATTTGTAATTGGGCATCGCGGAGCAGCAGGCTATGCTCCTGAAAATAC
TATGGCGGCTTTTCAACGTGGCTTGGCTTTACGCGCCGATGCCGTGGAATTAGATGTTAATTTGAGCAAAGATGGTGAGT
TGATGGTGATCCATGATCCAACGCTCAATCGCACTACCAACGGCTCGGGCTTAGTTTGTCACCACACTGCTGCCGAAATT
CAGGCGCTTGATGCTGGCTCATGGTTCGATCCTTCGTTCAGCGATTGCCGCGTGCCAACTTTGCGCGAGGTTTTGCAATG
GGCCAAGGATCGCACTAAAGTGGTGATTGAACTAAAAAATGGCCCGATTTTCTACCCCGATATTGAAGTGGCCTTGGTGC
GTTTGCTCGATGAATTGAATGTGCGTGATCAAGTCATGGCGATTTCGTTTGATCATGTGGTGTTGGGCCAACTCAAGGCG
ATCGCTCCCGATGTAGCAACTGGGGTGATTTATGCCTCGCGCGTGCCCGATGCGCCGGCTATGGCTAAATTGGTGAATGC
TGATTTGGTGATGCCTTATTGGGCAATGTTGACCCGCGAGGAAGTCGAAGCTTGCCATGCTGCTGATTTGTTTGTTAGCC
CATGGGGTGGCCCCGAACAAGATTATCAACATATTTTGAGTTTGGGGGTTGATGCGGTTGGCGCTGATTATCCCGACCGT
CCACGCCAATTTATGGCTGATTAA

Upstream 100 bases:

>100_bases
CCCACCAATAACCGATCCCCAAACGGGTGGCGTAGATTGACAGCCCCGCAGAGGCGTTGCACAATGGCATTAACCAAAAG
CTTTTGTGAAGGAGGTCGCT

Downstream 100 bases:

>100_bases
ATAGTTGACGGGCTACCAAGCGAATATGGTAGCCCGTCGTTTTTTAGGCGGCGTGGAGTTGTGGCTCAGCTGGTTGGGGC
ATTAATGCGGCGCTCAGATC

Product: glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MLQPFGARKGPFVIGHRGAAGYAPENTMAAFQRGLALRADAVELDVNLSKDGELMVIHDPTLNRTTNGSGLVCHHTAAEI
QALDAGSWFDPSFSDCRVPTLREVLQWAKDRTKVVIELKNGPIFYPDIEVALVRLLDELNVRDQVMAISFDHVVLGQLKA
IAPDVATGVIYASRVPDAPAMAKLVNADLVMPYWAMLTREEVEACHAADLFVSPWGGPEQDYQHILSLGVDAVGADYPDR
PRQFMAD

Sequences:

>Translated_247_residues
MLQPFGARKGPFVIGHRGAAGYAPENTMAAFQRGLALRADAVELDVNLSKDGELMVIHDPTLNRTTNGSGLVCHHTAAEI
QALDAGSWFDPSFSDCRVPTLREVLQWAKDRTKVVIELKNGPIFYPDIEVALVRLLDELNVRDQVMAISFDHVVLGQLKA
IAPDVATGVIYASRVPDAPAMAKLVNADLVMPYWAMLTREEVEACHAADLFVSPWGGPEQDYQHILSLGVDAVGADYPDR
PRQFMAD
>Mature_247_residues
MLQPFGARKGPFVIGHRGAAGYAPENTMAAFQRGLALRADAVELDVNLSKDGELMVIHDPTLNRTTNGSGLVCHHTAAEI
QALDAGSWFDPSFSDCRVPTLREVLQWAKDRTKVVIELKNGPIFYPDIEVALVRLLDELNVRDQVMAISFDHVVLGQLKA
IAPDVATGVIYASRVPDAPAMAKLVNADLVMPYWAMLTREEVEACHAADLFVSPWGGPEQDYQHILSLGVDAVGADYPDR
PRQFMAD

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=106, Percent_Identity=38.6792452830189, Blast_Score=73, Evalue=2e-13,
Organism=Escherichia coli, GI1789858, Length=110, Percent_Identity=35.4545454545455, Blast_Score=78, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17542344, Length=170, Percent_Identity=31.1764705882353, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17561436, Length=247, Percent_Identity=24.2914979757085, Blast_Score=79, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 27035; Mature: 27035

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQPFGARKGPFVIGHRGAAGYAPENTMAAFQRGLALRADAVELDVNLSKDGELMVIHDP
CCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHCCCEEECCEEEEEEEECCCCCEEEEECC
TLNRTTNGSGLVCHHTAAEIQALDAGSWFDPSFSDCRVPTLREVLQWAKDRTKVVIELKN
CCCCCCCCCCEEEEECHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECC
GPIFYPDIEVALVRLLDELNVRDQVMAISFDHVVLGQLKAIAPDVATGVIYASRVPDAPA
CCEECCCHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHCCHHHHHEEEECCCCCCHH
MAKLVNADLVMPYWAMLTREEVEACHAADLFVSPWGGPEQDYQHILSLGVDAVGADYPDR
HHHHHCCCHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHHCCHHHCCCCCCC
PRQFMAD
CHHHCCC
>Mature Secondary Structure
MLQPFGARKGPFVIGHRGAAGYAPENTMAAFQRGLALRADAVELDVNLSKDGELMVIHDP
CCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHCCCEEECCEEEEEEEECCCCCEEEEECC
TLNRTTNGSGLVCHHTAAEIQALDAGSWFDPSFSDCRVPTLREVLQWAKDRTKVVIELKN
CCCCCCCCCCEEEEECHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECC
GPIFYPDIEVALVRLLDELNVRDQVMAISFDHVVLGQLKAIAPDVATGVIYASRVPDAPA
CCEECCCHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHCCHHHHHEEEECCCCCCHH
MAKLVNADLVMPYWAMLTREEVEACHAADLFVSPWGGPEQDYQHILSLGVDAVGADYPDR
HHHHHCCCHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHHCCHHHCCCCCCC
PRQFMAD
CHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]