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The map label for this gene is ylmD [H]

Identifier: 159898075

GI number: 159898075

Start: 1802802

End: 1803608

Strand: Direct

Name: ylmD [H]

Synonym: Haur_1551

Alternate gene names: 159898075

Gene position: 1802802-1803608 (Clockwise)

Preceding gene: 159898074

Following gene: 159898076

Centisome position: 28.41

GC content: 53.41

Gene sequence:

>807_bases
ATGATTGAGCAAATTCAACGCTTATTGGGTTATCCTGAGTTGATCCATGGTATTTCAACCCGCCAAGGTGGGGTGAGCGT
CCCACCGCATGCGACCCTCAACCTTGGTTTTTCGCGGCCCGATGACCCTTCCGCAGTTTTGGCGAATCGGCGGCGCTTTG
CCGATCGAGTGGGCTTTCGTTTGGATGATGTCATTTTAGCAGGCCAAGTTCATGGCACAACTGTCGCCGTGGTTGGCGAG
TTGCAGCGTGGGCGGGGCGCGATCGATCGTGAAACAACTCTGCCGCCTGCCGATGGCCTTGTGACCAACCAACCAGGCTT
GGTGCTCTGGGCTAATTTTGCCGATTGCACTCCGTTGCTTTTTTTTGATCCGGTTGCTCAAGCGGTTGGGGTGGCTCACG
CTGGTTGGCAAGGCACGGTTAATAATATTGCTCAGGTAATGATCTCTACGATGCAAGCTCAATTTGGCTCAGAGCCAGCC
AACATTTTGGTGGCAATTGGCCCAGCGATCGGCCCATGTTGCTATGAGGTTGATCAGCCTGTAATCGGCGCGGTTGAGCA
GGCTTTTGCTGAGCATACATCGCAGGTCTTGTTGCGCCAGCTTGGCAAGCAACGACCGCATTTTGATTTATGGGCCGCTA
ATGCGCATTGGTTAGAGCAAGCAGGCATTCAACCCGCCAACCTGATTCGGATGAATATGTGTACTGCTTGTCATCATGAT
CGTTTCTTCTCTCATCGCCATGAACGAGGAGCCACTGGTCGATTCGCCGCTGTGATTGGTCTACGCGAGGTACACCATGC
CGTTTGA

Upstream 100 bases:

>100_bases
CGCAATTCTAGCCTATCTGGTGTTATGATTGGCGCTAGTACGCTTTTTGCAGTGTTGCTATTTAAATACAAGCGCATCCT
AGCAAGCCACGGGGGTTGGC

Downstream 100 bases:

>100_bases
TCATGCCCGATTGTTGGAACAGGTCGCTCAGATTCAGCAGCGAATCAGCCAAGCCGCCCAGCGTAGCCACCGTGATCCAG
CCAGCGTGCGCTTGATTGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MIEQIQRLLGYPELIHGISTRQGGVSVPPHATLNLGFSRPDDPSAVLANRRRFADRVGFRLDDVILAGQVHGTTVAVVGE
LQRGRGAIDRETTLPPADGLVTNQPGLVLWANFADCTPLLFFDPVAQAVGVAHAGWQGTVNNIAQVMISTMQAQFGSEPA
NILVAIGPAIGPCCYEVDQPVIGAVEQAFAEHTSQVLLRQLGKQRPHFDLWAANAHWLEQAGIQPANLIRMNMCTACHHD
RFFSHRHERGATGRFAAVIGLREVHHAV

Sequences:

>Translated_268_residues
MIEQIQRLLGYPELIHGISTRQGGVSVPPHATLNLGFSRPDDPSAVLANRRRFADRVGFRLDDVILAGQVHGTTVAVVGE
LQRGRGAIDRETTLPPADGLVTNQPGLVLWANFADCTPLLFFDPVAQAVGVAHAGWQGTVNNIAQVMISTMQAQFGSEPA
NILVAIGPAIGPCCYEVDQPVIGAVEQAFAEHTSQVLLRQLGKQRPHFDLWAANAHWLEQAGIQPANLIRMNMCTACHHD
RFFSHRHERGATGRFAAVIGLREVHHAV
>Mature_268_residues
MIEQIQRLLGYPELIHGISTRQGGVSVPPHATLNLGFSRPDDPSAVLANRRRFADRVGFRLDDVILAGQVHGTTVAVVGE
LQRGRGAIDRETTLPPADGLVTNQPGLVLWANFADCTPLLFFDPVAQAVGVAHAGWQGTVNNIAQVMISTMQAQFGSEPA
NILVAIGPAIGPCCYEVDQPVIGAVEQAFAEHTSQVLLRQLGKQRPHFDLWAANAHWLEQAGIQPANLIRMNMCTACHHD
RFFSHRHERGATGRFAAVIGLREVHHAV

Specific function: Unknown

COG id: COG1496

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0124 family [H]

Homologues:

Organism=Homo sapiens, GI190194374, Length=258, Percent_Identity=33.7209302325581, Blast_Score=139, Evalue=2e-33,
Organism=Homo sapiens, GI190194372, Length=258, Percent_Identity=33.7209302325581, Blast_Score=139, Evalue=2e-33,
Organism=Escherichia coli, GI1788945, Length=253, Percent_Identity=33.596837944664, Blast_Score=105, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003730
- InterPro:   IPR011324 [H]

Pfam domain/function: PF02578 Cu-oxidase_4 [H]

EC number: NA

Molecular weight: Translated: 29100; Mature: 29100

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEQIQRLLGYPELIHGISTRQGGVSVPPHATLNLGFSRPDDPSAVLANRRRFADRVGFR
CHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCC
LDDVILAGQVHGTTVAVVGELQRGRGAIDRETTLPPADGLVTNQPGLVLWANFADCTPLL
HHHEEEECCCCCCEEEEEEHHHHCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCHHH
FFDPVAQAVGVAHAGWQGTVNNIAQVMISTMQAQFGSEPANILVAIGPAIGPCCYEVDQP
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCH
VIGAVEQAFAEHTSQVLLRQLGKQRPHFDLWAANAHWLEQAGIQPANLIRMNMCTACHHD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHH
RFFSHRHERGATGRFAAVIGLREVHHAV
HHHHHHHHCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIEQIQRLLGYPELIHGISTRQGGVSVPPHATLNLGFSRPDDPSAVLANRRRFADRVGFR
CHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCC
LDDVILAGQVHGTTVAVVGELQRGRGAIDRETTLPPADGLVTNQPGLVLWANFADCTPLL
HHHEEEECCCCCCEEEEEEHHHHCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCHHH
FFDPVAQAVGVAHAGWQGTVNNIAQVMISTMQAQFGSEPANILVAIGPAIGPCCYEVDQP
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCH
VIGAVEQAFAEHTSQVLLRQLGKQRPHFDLWAANAHWLEQAGIQPANLIRMNMCTACHHD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHH
RFFSHRHERGATGRFAAVIGLREVHHAV
HHHHHHHHCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]