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The map label for this gene is ycfQ [H]

Identifier: 159898020

GI number: 159898020

Start: 1744171

End: 1744785

Strand: Direct

Name: ycfQ [H]

Synonym: Haur_1495

Alternate gene names: 159898020

Gene position: 1744171-1744785 (Clockwise)

Preceding gene: 159898017

Following gene: 159898027

Centisome position: 27.48

GC content: 49.11

Gene sequence:

>615_bases
ATGAAAGCAGTAAATGAACCAAAAGTTGGGCGGCCTCGGGCCTTTGATCGTGATGTGGCCTTGAACCAGGCCTTAGAAGT
TTTTTGGAATTTGGGCTATGAGGGCGCTTCGTTGAGCGATTTGACCGAGGCGATGGGGATTAATCGCCCTAGCTTGTATG
CAGCTTTTGGTAATAAAGAGAGCCTCTTTCGCGAAGTGCTGAATCGCTACTATGAATTGAGCTTGCCTTCAATTCTGGCA
GCCTTAGATCACCCCCAAATTGCTATTGCGCTTGAGCAATTGCTGCGGACTAATGTGGCCCAAATTACCAACCCATTAGT
GCCTGCTGGCTGTTTATTAATTCGTGGTGTGCCGGTCTGCAATTCGCAAACCGAGCCAATTCATCACGATGTAATTGAGC
GGCGTTTGGGCCAAGAGCACGTTTTGAGCGAACGTTTGCAACGTGCCCAACGTGAAGGCCAGCTGCACGAATCGGTTGAT
CCGTTGGCGCTGGCCCGCTGCATTATGACCTTTTCCAATGGCTTATCGATTCAAAGTATCAATGGGGTAACCCAAGCTGA
GCTTGATCAAGCGGCTGATTTGTTTTTGCAAGGGCTACGGGGATTGTTGGTATAA

Upstream 100 bases:

>100_bases
GGTGAGGGCATTCTGGTCGTTATCCTTTATCTGCGCTTGTGTTAAGCACCTGTTTAGCGTATGATCATTATGGTCAATAA
AGATAGATTGGTTAGCGACG

Downstream 100 bases:

>100_bases
CATCCTAAATGATAAAAAAATTACGTTTAGCAGCTGAGTATGCTTGCTTTCCGCTCTGGTGGGACGATGGTGTTCAGTTT
GGTGAGCTTGATCCCAGCGA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MKAVNEPKVGRPRAFDRDVALNQALEVFWNLGYEGASLSDLTEAMGINRPSLYAAFGNKESLFREVLNRYYELSLPSILA
ALDHPQIAIALEQLLRTNVAQITNPLVPAGCLLIRGVPVCNSQTEPIHHDVIERRLGQEHVLSERLQRAQREGQLHESVD
PLALARCIMTFSNGLSIQSINGVTQAELDQAADLFLQGLRGLLV

Sequences:

>Translated_204_residues
MKAVNEPKVGRPRAFDRDVALNQALEVFWNLGYEGASLSDLTEAMGINRPSLYAAFGNKESLFREVLNRYYELSLPSILA
ALDHPQIAIALEQLLRTNVAQITNPLVPAGCLLIRGVPVCNSQTEPIHHDVIERRLGQEHVLSERLQRAQREGQLHESVD
PLALARCIMTFSNGLSIQSINGVTQAELDQAADLFLQGLRGLLV
>Mature_204_residues
MKAVNEPKVGRPRAFDRDVALNQALEVFWNLGYEGASLSDLTEAMGINRPSLYAAFGNKESLFREVLNRYYELSLPSILA
ALDHPQIAIALEQLLRTNVAQITNPLVPAGCLLIRGVPVCNSQTEPIHHDVIERRLGQEHVLSERLQRAQREGQLHESVD
PLALARCIMTFSNGLSIQSINGVTQAELDQAADLFLQGLRGLLV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=185, Percent_Identity=35.1351351351351, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI87082397, Length=121, Percent_Identity=33.8842975206612, Blast_Score=68, Evalue=4e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22561; Mature: 22561

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAVNEPKVGRPRAFDRDVALNQALEVFWNLGYEGASLSDLTEAMGINRPSLYAAFGNKE
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHEEECCCHH
SLFREVLNRYYELSLPSILAALDHPQIAIALEQLLRTNVAQITNPLVPAGCLLIRGVPVC
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC
NSQTEPIHHDVIERRLGQEHVLSERLQRAQREGQLHESVDPLALARCIMTFSNGLSIQSI
CCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHCCCCEECC
NGVTQAELDQAADLFLQGLRGLLV
CCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKAVNEPKVGRPRAFDRDVALNQALEVFWNLGYEGASLSDLTEAMGINRPSLYAAFGNKE
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHEEECCCHH
SLFREVLNRYYELSLPSILAALDHPQIAIALEQLLRTNVAQITNPLVPAGCLLIRGVPVC
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC
NSQTEPIHHDVIERRLGQEHVLSERLQRAQREGQLHESVDPLALARCIMTFSNGLSIQSI
CCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHCCCCEECC
NGVTQAELDQAADLFLQGLRGLLV
CCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]