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The map label for this gene is pyrF

Identifier: 159897969

GI number: 159897969

Start: 1677569

End: 1678372

Strand: Reverse

Name: pyrF

Synonym: Haur_1444

Alternate gene names: 159897969

Gene position: 1678372-1677569 (Counterclockwise)

Preceding gene: 159897970

Following gene: 159897968

Centisome position: 26.45

GC content: 51.37

Gene sequence:

>804_bases
ATGTTTATGCAGAAATTCCGTGCGGCAGCGACCAGCAATCGTTCAACCTTGTGTATTGGGCTTGACCCCGATTTGGCGCG
GTTACCGGAACATTTACCCCGTGATGCCGCTGGAATTGTCCAATTTAATCAAGCGATTATCGAGGCAACCAGCGATCTGG
TTTGTGCTTATAAACCAAATATGGCCTTTTACGAAGCCTTGGGCAGTGCTGGCTGGCTAGCCTTAAAACAAACCATCGCC
AGCATTCCCAGCCATATTCCAGTGCTGCTCGATGCCAAGCGCGGCGATATTGGCTCGACCGCCCAAGCTTATGCAAGCGC
AGCTTTTGATGAGCTTGGCGTTGATGCGATTACGCTTAGCCCGTATATGGGCTACGATTCGCTGCAACCATTTTTGGAAC
GAGCCGATAAAACCTGTTTCATTTTGTGCCGTACCTCCAACCCTGGTGGCGACGATGTGCAAAATTTATTGTTGGATAAC
GGCGAGCCACTCTTTTTGAAAATTGCCGAACTGGTGGCCAAACGCTGGAATAGCAACCACAATTGTGGCCTAGTGGTTGG
CGCAACCTATCCCGCTGAAATTGCCACGATTCATCAGCGCTACCCTGAGTTGCCGTTGTTGGTACCTGGGGTTGGCAGCC
AAGGTGGCGATATCGAAGAAGTGCTCGCTGCGGCAGGCGAACAGGCCATTATCAACGTTTCGCGCTCGGTGTTGTATGCT
AGTGGTGGTAGTAGCTTCGCTGAAGCTGCCCGCAAGGTAGCCCAAGCCTTTTTAGTGCCTAAACAAGCCTTAAATCACCC
GTAG

Upstream 100 bases:

>100_bases
GGGTTCAGTCGTCAGGCAGTAGTTCAACCAATGTGTTGCGGAGTTTTGGCAAAATCCGAGTATCATAAGGCACGGGCAGC
AATTTAGTGGGAGCAAACCC

Downstream 100 bases:

>100_bases
TAGGGATGCCTTTTGGCTAGTGTACTGGCATTGTTCGTGATATAGTAACGCTCAATTCGTTCCTTAGTTGCTAGGAGGTA
CAACCGATGACGGTTGAAGC

Product: orotidine 5'-phosphate decarboxylase

Products: NA

Alternate protein names: OMP decarboxylase; OMPDCase; OMPdecase

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MFMQKFRAAATSNRSTLCIGLDPDLARLPEHLPRDAAGIVQFNQAIIEATSDLVCAYKPNMAFYEALGSAGWLALKQTIA
SIPSHIPVLLDAKRGDIGSTAQAYASAAFDELGVDAITLSPYMGYDSLQPFLERADKTCFILCRTSNPGGDDVQNLLLDN
GEPLFLKIAELVAKRWNSNHNCGLVVGATYPAEIATIHQRYPELPLLVPGVGSQGGDIEEVLAAAGEQAIINVSRSVLYA
SGGSSFAEAARKVAQAFLVPKQALNHP

Sequences:

>Translated_267_residues
MFMQKFRAAATSNRSTLCIGLDPDLARLPEHLPRDAAGIVQFNQAIIEATSDLVCAYKPNMAFYEALGSAGWLALKQTIA
SIPSHIPVLLDAKRGDIGSTAQAYASAAFDELGVDAITLSPYMGYDSLQPFLERADKTCFILCRTSNPGGDDVQNLLLDN
GEPLFLKIAELVAKRWNSNHNCGLVVGATYPAEIATIHQRYPELPLLVPGVGSQGGDIEEVLAAAGEQAIINVSRSVLYA
SGGSSFAEAARKVAQAFLVPKQALNHP
>Mature_267_residues
MFMQKFRAAATSNRSTLCIGLDPDLARLPEHLPRDAAGIVQFNQAIIEATSDLVCAYKPNMAFYEALGSAGWLALKQTIA
SIPSHIPVLLDAKRGDIGSTAQAYASAAFDELGVDAITLSPYMGYDSLQPFLERADKTCFILCRTSNPGGDDVQNLLLDN
GEPLFLKIAELVAKRWNSNHNCGLVVGATYPAEIATIHQRYPELPLLVPGVGSQGGDIEEVLAAAGEQAIINVSRSVLYA
SGGSSFAEAARKVAQAFLVPKQALNHP

Specific function: Unknown

COG id: COG0284

COG function: function code F; Orotidine-5'-phosphate decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OMP decarboxylase family. Type 2 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PYRF_HERA2 (A9B3C5)

Other databases:

- EMBL:   CP000875
- RefSeq:   YP_001544216.1
- ProteinModelPortal:   A9B3C5
- SMR:   A9B3C5
- GeneID:   5733308
- GenomeReviews:   CP000875_GR
- KEGG:   hau:Haur_1444
- HOGENOM:   HBG348634
- OMA:   LLCRTSN
- BioCyc:   HAUR316274:HAUR_1444-MONOMER
- HAMAP:   MF_01215
- InterPro:   IPR013785
- InterPro:   IPR018089
- InterPro:   IPR011995
- InterPro:   IPR001754
- InterPro:   IPR011060
- Gene3D:   G3DSA:3.20.20.70
- SMART:   SM00934
- TIGRFAMs:   TIGR02127

Pfam domain/function: PF00215 OMPdecase; SSF51366 RibP_bind_barrel

EC number: =4.1.1.23

Molecular weight: Translated: 28515; Mature: 28515

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS00156 OMPDECASE

Important sites: ACT_SITE 93-93

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFMQKFRAAATSNRSTLCIGLDPDLARLPEHLPRDAAGIVQFNQAIIEATSDLVCAYKPN
CCHHHHHHHHCCCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEECCC
MAFYEALGSAGWLALKQTIASIPSHIPVLLDAKRGDIGSTAQAYASAAFDELGVDAITLS
HHHHHHHCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEC
PYMGYDSLQPFLERADKTCFILCRTSNPGGDDVQNLLLDNGEPLFLKIAELVAKRWNSNH
CCCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
NCGLVVGATYPAEIATIHQRYPELPLLVPGVGSQGGDIEEVLAAAGEQAIINVSRSVLYA
CCEEEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHCCCHHEEEHHHHEEEE
SGGSSFAEAARKVAQAFLVPKQALNHP
CCCCHHHHHHHHHHHHHHCCHHHHCCC
>Mature Secondary Structure
MFMQKFRAAATSNRSTLCIGLDPDLARLPEHLPRDAAGIVQFNQAIIEATSDLVCAYKPN
CCHHHHHHHHCCCCCEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEECCC
MAFYEALGSAGWLALKQTIASIPSHIPVLLDAKRGDIGSTAQAYASAAFDELGVDAITLS
HHHHHHHCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEC
PYMGYDSLQPFLERADKTCFILCRTSNPGGDDVQNLLLDNGEPLFLKIAELVAKRWNSNH
CCCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
NCGLVVGATYPAEIATIHQRYPELPLLVPGVGSQGGDIEEVLAAAGEQAIINVSRSVLYA
CCEEEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHCCCHHEEEHHHHEEEE
SGGSSFAEAARKVAQAFLVPKQALNHP
CCCCHHHHHHHHHHHHHHCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA