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The map label for this gene is smpB [H]

Identifier: 159897968

GI number: 159897968

Start: 1676775

End: 1677251

Strand: Reverse

Name: smpB [H]

Synonym: Haur_1443

Alternate gene names: 159897968

Gene position: 1677251-1676775 (Counterclockwise)

Preceding gene: 159897969

Following gene: 159897966

Centisome position: 26.43

GC content: 47.17

Gene sequence:

>477_bases
GTGGCTAAAGAGAGTAAAGATTCAATCGAGGTCATGGGCGATAATCGTAAAGCTCGCCATGATTATTTTATTCAAGAAAC
CTATGAAGCTGGTATCGTGTTACGTGGCACCGAAATTAAGTCGATTCGTCGCGGTCAGGTGCAGTTGCGTGGCTCGTATG
CGCGGGTACAAAATGGCGAGATTTGGCTCTATGATGCCCATATCGCGCCTTATGCCGAAACTGGCGAATTATTCAACCAT
GAGCCAATGCGCCCGCGCAAGTTATTATTACACCGCCGCGAAATTTTGAAGCTCCACCAAAAATTAGCAACCAAGGGTTT
AACTTTAGTACCTTTACGCATTTATCTGCGTGGCCGCTTAGCCAAGATAGAGCTAGGGCTAGCCCAAGGTAAAAAGCTCT
ACGATAAGCGTGATTCGATCGCGGATCGTGATGCCAAGCGCCAGATTGAACGGGCGATGAAAAATCGCTATGAGTAA

Upstream 100 bases:

>100_bases
CTTTTTGCCCAGCGAAAAAAAGAAATAACCCACACCCACAGATCGCTCTAGGGTAGGGCAGGCTGTCCTACCCGATTTGG
TATTTTTGGAGGAACGAAGC

Downstream 100 bases:

>100_bases
ATTGGTGGGTAGGTCGTCCACAACCAAGCAGCTGGAAAAATCTCAGAGCAGCGGTTGCGGACGACACCATAGGCCACAGA
TTAAACCACAATTGCCGCCA

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MAKESKDSIEVMGDNRKARHDYFIQETYEAGIVLRGTEIKSIRRGQVQLRGSYARVQNGEIWLYDAHIAPYAETGELFNH
EPMRPRKLLLHRREILKLHQKLATKGLTLVPLRIYLRGRLAKIELGLAQGKKLYDKRDSIADRDAKRQIERAMKNRYE

Sequences:

>Translated_158_residues
MAKESKDSIEVMGDNRKARHDYFIQETYEAGIVLRGTEIKSIRRGQVQLRGSYARVQNGEIWLYDAHIAPYAETGELFNH
EPMRPRKLLLHRREILKLHQKLATKGLTLVPLRIYLRGRLAKIELGLAQGKKLYDKRDSIADRDAKRQIERAMKNRYE
>Mature_157_residues
AKESKDSIEVMGDNRKARHDYFIQETYEAGIVLRGTEIKSIRRGQVQLRGSYARVQNGEIWLYDAHIAPYAETGELFNHE
PMRPRKLLLHRREILKLHQKLATKGLTLVPLRIYLRGRLAKIELGLAQGKKLYDKRDSIADRDAKRQIERAMKNRYE

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes [H]

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family [H]

Homologues:

Organism=Escherichia coli, GI1788973, Length=141, Percent_Identity=40.4255319148936, Blast_Score=119, Evalue=8e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000037
- InterPro:   IPR020081
- ProDom:   PD004488 [H]

Pfam domain/function: PF01668 SmpB [H]

EC number: NA

Molecular weight: Translated: 18501; Mature: 18370

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKESKDSIEVMGDNRKARHDYFIQETYEAGIVLRGTEIKSIRRGQVQLRGSYARVQNGE
CCCCCCCCEEEECCCCCCCHHHHHHHHCCCCEEEECCHHHHHHCCCEEEECCEEEECCCE
IWLYDAHIAPYAETGELFNHEPMRPRKLLLHRREILKLHQKLATKGLTLVPLRIYLRGRL
EEEEECCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCCC
AKIELGLAQGKKLYDKRDSIADRDAKRQIERAMKNRYE
EEEEECHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKESKDSIEVMGDNRKARHDYFIQETYEAGIVLRGTEIKSIRRGQVQLRGSYARVQNGE
CCCCCCCEEEECCCCCCCHHHHHHHHCCCCEEEECCHHHHHHCCCEEEECCEEEECCCE
IWLYDAHIAPYAETGELFNHEPMRPRKLLLHRREILKLHQKLATKGLTLVPLRIYLRGRL
EEEEECCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCCC
AKIELGLAQGKKLYDKRDSIADRDAKRQIERAMKNRYE
EEEEECHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA