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The map label for this gene is yqhC [H]

Identifier: 159897959

GI number: 159897959

Start: 1661386

End: 1662324

Strand: Direct

Name: yqhC [H]

Synonym: Haur_1434

Alternate gene names: 159897959

Gene position: 1661386-1662324 (Clockwise)

Preceding gene: 159897958

Following gene: 159897963

Centisome position: 26.18

GC content: 51.86

Gene sequence:

>939_bases
ATGACGCTGTTGGAGCTTGCCCCCACCCGTGAAACTGAACCCTTATTAGGGCCAGAACGCCGCTATTTGGCCCAGTTATT
GGCTCAGCATGCCCCACATGATGGGCGGTTTGATTTGGCTTTTCCTCGAACCTATGCCATCCGTGAATCAAAACCGCATC
AACGCTCGCTGCCAGCACTCTATCAGCCCAGCATTTGTCTTGTAGCCCAAGGAGCCAAACAGTTGGTCTTGGGTGATCAG
ACCTACAATTATGATACTGAACATGTGTTGATTGTGGCTGTTGATTTGCCAGTTGCCGCCCAAATTACCCAAGCCAGCGC
TGCCGAGCCATATTTGTGCTTCAAGCTGGAGTTTGATCCACAGCGCGTGGCCGAATTAGCGCTTAAAGTCTATTCGCAGG
GTGTTCCTGCGCCAACTCAGCTTCGGGCAATTTCGACTGAACGCACCAATCGCCAGTTGGTACAAGCTGCGAGCCGCTTG
CTTGATTTGCTCAGCCAGCCCGATGAGGTTGAATTGTTGGCTCCGTTGGTGATCGACGAGATGATTATTCGCTTGTTGCG
TAGCCCATTTGGTGGTCGGCTGGCTCAAATTGGCCAAACCACTTCGCGAGTTACTCCAGTAGCGCAGGCGATTGGTTGGT
TGCGCCGCCATTTTGCCCAACCTTTGCGGGTTGAGGAGCTTGCCACGCTGGCGAATATGAGTGTTTCGGCTTTTCATCTA
CACTTCAAGGCGGTTACCGCGCTTAGTCCAATTCAGTTTCAAAAAACCTTGCGTTTGCACGAAGCGCGGCGTTTATTAGT
TGCGACAGCATTAGAGATTGGGTCAATTAGTCAGCAAGTTGGCTATGCCAGCCTCTCACAATTTAGCCGCGAATATCGAC
GCTACTTTGGTTGCTCACCAACTGAGGATTTGGCTCGCTTGCGGCGATCAAGTGCCTAG

Upstream 100 bases:

>100_bases
TAAACTCGCTGACCAGCGCGATTTTGTTTGATTTCTTCGATCCAACAAGCAGCGCTTTTTGGTATAGTAGTTGCAGCTTA
TTGCGACGAGGATACCTACC

Downstream 100 bases:

>100_bases
CCAAGTTCAGCTTGATATTGCTCGTCGCTAACATGCTCTAGCCATTCAACGACTGTGCCGTTTAGTTGCTCTTGAATCGC
GATATGGGTCATGGCCGTGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MTLLELAPTRETEPLLGPERRYLAQLLAQHAPHDGRFDLAFPRTYAIRESKPHQRSLPALYQPSICLVAQGAKQLVLGDQ
TYNYDTEHVLIVAVDLPVAAQITQASAAEPYLCFKLEFDPQRVAELALKVYSQGVPAPTQLRAISTERTNRQLVQAASRL
LDLLSQPDEVELLAPLVIDEMIIRLLRSPFGGRLAQIGQTTSRVTPVAQAIGWLRRHFAQPLRVEELATLANMSVSAFHL
HFKAVTALSPIQFQKTLRLHEARRLLVATALEIGSISQQVGYASLSQFSREYRRYFGCSPTEDLARLRRSSA

Sequences:

>Translated_312_residues
MTLLELAPTRETEPLLGPERRYLAQLLAQHAPHDGRFDLAFPRTYAIRESKPHQRSLPALYQPSICLVAQGAKQLVLGDQ
TYNYDTEHVLIVAVDLPVAAQITQASAAEPYLCFKLEFDPQRVAELALKVYSQGVPAPTQLRAISTERTNRQLVQAASRL
LDLLSQPDEVELLAPLVIDEMIIRLLRSPFGGRLAQIGQTTSRVTPVAQAIGWLRRHFAQPLRVEELATLANMSVSAFHL
HFKAVTALSPIQFQKTLRLHEARRLLVATALEIGSISQQVGYASLSQFSREYRRYFGCSPTEDLARLRRSSA
>Mature_311_residues
TLLELAPTRETEPLLGPERRYLAQLLAQHAPHDGRFDLAFPRTYAIRESKPHQRSLPALYQPSICLVAQGAKQLVLGDQT
YNYDTEHVLIVAVDLPVAAQITQASAAEPYLCFKLEFDPQRVAELALKVYSQGVPAPTQLRAISTERTNRQLVQAASRLL
DLLSQPDEVELLAPLVIDEMIIRLLRSPFGGRLAQIGQTTSRVTPVAQAIGWLRRHFAQPLRVEELATLANMSVSAFHLH
FKAVTALSPIQFQKTLRLHEARRLLVATALEIGSISQQVGYASLSQFSREYRRYFGCSPTEDLARLRRSSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=252, Percent_Identity=32.9365079365079, Blast_Score=157, Evalue=6e-40,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34885; Mature: 34753

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLLELAPTRETEPLLGPERRYLAQLLAQHAPHDGRFDLAFPRTYAIRESKPHQRSLPAL
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCEEEECCCCCCHHCCCCH
YQPSICLVAQGAKQLVLGDQTYNYDTEHVLIVAVDLPVAAQITQASAAEPYLCFKLEFDP
HCCCEEEEECCCHHEEECCCCCCCCCCEEEEEEECCCCHHHHHHHCCCCCEEEEEEECCH
QRVAELALKVYSQGVPAPTQLRAISTERTNRQLVQAASRLLDLLSQPDEVELLAPLVIDE
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
MIIRLLRSPFGGRLAQIGQTTSRVTPVAQAIGWLRRHFAQPLRVEELATLANMSVSAFHL
HHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHH
HFKAVTALSPIQFQKTLRLHEARRLLVATALEIGSISQQVGYASLSQFSREYRRYFGCSP
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TEDLARLRRSSA
HHHHHHHHHCCC
>Mature Secondary Structure 
TLLELAPTRETEPLLGPERRYLAQLLAQHAPHDGRFDLAFPRTYAIRESKPHQRSLPAL
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCEEEECCCCCCHHCCCCH
YQPSICLVAQGAKQLVLGDQTYNYDTEHVLIVAVDLPVAAQITQASAAEPYLCFKLEFDP
HCCCEEEEECCCHHEEECCCCCCCCCCEEEEEEECCCCHHHHHHHCCCCCEEEEEEECCH
QRVAELALKVYSQGVPAPTQLRAISTERTNRQLVQAASRLLDLLSQPDEVELLAPLVIDE
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
MIIRLLRSPFGGRLAQIGQTTSRVTPVAQAIGWLRRHFAQPLRVEELATLANMSVSAFHL
HHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHH
HFKAVTALSPIQFQKTLRLHEARRLLVATALEIGSISQQVGYASLSQFSREYRRYFGCSP
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TEDLARLRRSSA
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]