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The map label for this gene is pepR1 [H]

Identifier: 159897771

GI number: 159897771

Start: 1447833

End: 1448855

Strand: Direct

Name: pepR1 [H]

Synonym: Haur_1242

Alternate gene names: 159897771

Gene position: 1447833-1448855 (Clockwise)

Preceding gene: 159897761

Following gene: 159897772

Centisome position: 22.81

GC content: 53.76

Gene sequence:

>1023_bases
GTGCCAACGATGGTCGATGTCGCGAAACGAGCCGGAGTTGCGCTCAGCACCGTCTCATATGCACTCAATGGAACGAGGCC
GATCTCTGAAGAAACCCGCCAGCGGATTTATGCCGCGATGGAGGAGCTGGGTTACAAACCGCATGCCTTAGCTCGCGGTT
TGGCCAGTAAGCGCAGCAAAATTATTGCCCTGCTTTTCCCCACGCCTGAACGTGGCTTAGGCTTAACTGAGCTTGAGTTT
GTCACCAGTGCGGCGGAAGCGGCCCGCAATAAAGGCTACCACCTGGTTTTATGGTCGTTGCCCACCGATTCCAGCGAGCT
ACGCCAACTCTTGCAACAAGGCCTTGTCGATGGCGTGTTGGTGATGGAAGTCCACCTCAATGATCCACGGATTGAATTAC
TGCGCGAGCTTGAATTTCCCTTCAGCATGATTGGGCGTTGTGCCGAAAGCACTGGCATGAGCTATGTTGATATCGATTTT
GATCGCACGACCCAACTCGCAGTCAATTGCCTCGCTGAGCTTGGCCACCGCCAAATTGGCTTTATCAATCATTCACACGA
AGCGTTTGAGGCTGGCTACGGACCGACCGTGCGGGTGGCGCAACGCTTCAATGAGGCGATTGCTGCCGCTCAATTACACG
GTGTGAGCAGCTTTTGCCACGATTCAGTTGCCGCAGGCTACGAAACCTTTAACCAACTTTTAACCGATCATCCAGCTTTA
AGTGGCTTGATTGTGATGAATGAACGGGCAATTCCAGGCATTATTCAAGCTGTCAGCGAACGTGGCTGGTCAATTCCCGA
CGATATTTCGCTGATTTCGCTGGTTTCTTCGGCGCGGGTTGCCGAAATGACCTTGCCAACCCTGACGACTCTAGAACCAC
CAATCGCCGAGCTTGGGGCGTTGGGGGTCGATTTACTCATCCAACAACTCGAAGCCCAAGATCGCGAGTTGCCCCAAGCA
CTCTTGCCATGTCAACTAGTTGTGCGCGGCAGTACCGGTCAAGCACGGCGCACAGAACGATAG

Upstream 100 bases:

>100_bases
GAGGTTTTGTATAGTATTCATCGAAGCGTTTCGACTATGCGTTTCGACTACACGCTTCGATAAACTAAGCTAACCGCCAC
AAGCGAGAACGGGGGGCATT

Downstream 100 bases:

>100_bases
TTCACCACCGCTCACTCGTCGGCTGAAATTAACAATGACTATGGTAACGCTCCCAAGGAGGACACAGATGTCCACATCGA
AGTCAACGTTCCGACTCTCT

Product: LacI family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MPTMVDVAKRAGVALSTVSYALNGTRPISEETRQRIYAAMEELGYKPHALARGLASKRSKIIALLFPTPERGLGLTELEF
VTSAAEAARNKGYHLVLWSLPTDSSELRQLLQQGLVDGVLVMEVHLNDPRIELLRELEFPFSMIGRCAESTGMSYVDIDF
DRTTQLAVNCLAELGHRQIGFINHSHEAFEAGYGPTVRVAQRFNEAIAAAQLHGVSSFCHDSVAAGYETFNQLLTDHPAL
SGLIVMNERAIPGIIQAVSERGWSIPDDISLISLVSSARVAEMTLPTLTTLEPPIAELGALGVDLLIQQLEAQDRELPQA
LLPCQLVVRGSTGQARRTER

Sequences:

>Translated_340_residues
MPTMVDVAKRAGVALSTVSYALNGTRPISEETRQRIYAAMEELGYKPHALARGLASKRSKIIALLFPTPERGLGLTELEF
VTSAAEAARNKGYHLVLWSLPTDSSELRQLLQQGLVDGVLVMEVHLNDPRIELLRELEFPFSMIGRCAESTGMSYVDIDF
DRTTQLAVNCLAELGHRQIGFINHSHEAFEAGYGPTVRVAQRFNEAIAAAQLHGVSSFCHDSVAAGYETFNQLLTDHPAL
SGLIVMNERAIPGIIQAVSERGWSIPDDISLISLVSSARVAEMTLPTLTTLEPPIAELGALGVDLLIQQLEAQDRELPQA
LLPCQLVVRGSTGQARRTER
>Mature_339_residues
PTMVDVAKRAGVALSTVSYALNGTRPISEETRQRIYAAMEELGYKPHALARGLASKRSKIIALLFPTPERGLGLTELEFV
TSAAEAARNKGYHLVLWSLPTDSSELRQLLQQGLVDGVLVMEVHLNDPRIELLRELEFPFSMIGRCAESTGMSYVDIDFD
RTTQLAVNCLAELGHRQIGFINHSHEAFEAGYGPTVRVAQRFNEAIAAAQLHGVSSFCHDSVAAGYETFNQLLTDHPALS
GLIVMNERAIPGIIQAVSERGWSIPDDISLISLVSSARVAEMTLPTLTTLEPPIAELGALGVDLLIQQLEAQDRELPQAL
LPCQLVVRGSTGQARRTER

Specific function: Transcriptional regulator of the pepQ gene for prolidase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789068, Length=343, Percent_Identity=29.4460641399417, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1787948, Length=330, Percent_Identity=30, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1790194, Length=346, Percent_Identity=28.0346820809249, Blast_Score=98, Evalue=9e-22,
Organism=Escherichia coli, GI1790369, Length=335, Percent_Identity=27.4626865671642, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1786540, Length=353, Percent_Identity=26.0623229461756, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789456, Length=348, Percent_Identity=29.5977011494253, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787580, Length=319, Percent_Identity=23.1974921630094, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788474, Length=315, Percent_Identity=25.0793650793651, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1789202, Length=308, Percent_Identity=24.3506493506494, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790689, Length=327, Percent_Identity=24.1590214067278, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790715, Length=323, Percent_Identity=22.9102167182663, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1787906, Length=346, Percent_Identity=26.3005780346821, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI48994940, Length=323, Percent_Identity=23.5294117647059, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 37136; Mature: 37005

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTMVDVAKRAGVALSTVSYALNGTRPISEETRQRIYAAMEELGYKPHALARGLASKRSK
CCCHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
IIALLFPTPERGLGLTELEFVTSAAEAARNKGYHLVLWSLPTDSSELRQLLQQGLVDGVL
EEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCEE
VMEVHLNDPRIELLRELEFPFSMIGRCAESTGMSYVDIDFDRTTQLAVNCLAELGHRQIG
EEEEECCCHHHHHHHHHCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCEE
FINHSHEAFEAGYGPTVRVAQRFNEAIAAAQLHGVSSFCHDSVAAGYETFNQLLTDHPAL
EECCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SGLIVMNERAIPGIIQAVSERGWSIPDDISLISLVSSARVAEMTLPTLTTLEPPIAELGA
CCEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHH
LGVDLLIQQLEAQDRELPQALLPCQLVVRGSTGQARRTER
HHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure 
PTMVDVAKRAGVALSTVSYALNGTRPISEETRQRIYAAMEELGYKPHALARGLASKRSK
CCHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
IIALLFPTPERGLGLTELEFVTSAAEAARNKGYHLVLWSLPTDSSELRQLLQQGLVDGVL
EEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCEE
VMEVHLNDPRIELLRELEFPFSMIGRCAESTGMSYVDIDFDRTTQLAVNCLAELGHRQIG
EEEEECCCHHHHHHHHHCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCEE
FINHSHEAFEAGYGPTVRVAQRFNEAIAAAQLHGVSSFCHDSVAAGYETFNQLLTDHPAL
EECCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SGLIVMNERAIPGIIQAVSERGWSIPDDISLISLVSSARVAEMTLPTLTTLEPPIAELGA
CCEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHH
LGVDLLIQQLEAQDRELPQALLPCQLVVRGSTGQARRTER
HHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA