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The map label for this gene is rnz [H]

Identifier: 159897156

GI number: 159897156

Start: 722245

End: 723162

Strand: Reverse

Name: rnz [H]

Synonym: Haur_0627

Alternate gene names: 159897156

Gene position: 723162-722245 (Counterclockwise)

Preceding gene: 159897157

Following gene: 159897155

Centisome position: 11.39

GC content: 51.42

Gene sequence:

>918_bases
ATGGCTGGGACAATGCGGGTCACATTTTGGGGTGTTCGGGGTAGCTATCCGGTTCCCGGGTCGGATACTGTGGGGTTTGG
CGGCAATACACCATGTGTCGAAGTCGAGGCCAATGGGCATACGATTATTCTCGATGCGGGGACGGGAATTGTGCGCCTCG
GTAATGATCTGTTGCGACGAGCCAAAGAGCGTGGTGGACCAGTACGGGCAACCTTGCTATTTAGCCATATGCACCATGAT
CATACCCAAGGCTTTCCATTCTTTACTCCAGCCTATGTTGGCTCAAGTATTTTGAATATTTTTGGGCCACGGGTATTCGA
GCGTGATCTTGAAGAAACTTTGGCACATTCAATGTTGCCACCAAGTTTTCCGGTGTCGTTGGGCGAAATGAACTCACTGA
AGTTTATGCGCAACATGACCGAGACCGATGTATTGCTGTTTGATGCCAATCAAGATACGGTGACGGTCAAGAATTTCTAC
CACGATCAAATTACTGATGATCCTGATGTGGTGCAGATTCGGGCCATGCGTTCGTATGCGCACCCCGAAGGTGTGTTTAT
CTATCGGGTGCAATGGCAGGGCAAGAGTGTGGTCTATGCGACCGACACCGAAGGCTATGTCAATACTGATCAGCGCTTGG
CAGCGTTTGCCAACCAAACCGACTTGTTGATCCACGATGCTCAATATAGTGAAGCGCATTATCTCGGCCATGCCGGTTAT
AACGCAACCCAAGGTTGGGGCCACTCTACGCCGCAGATGGCGTGTGCTGTGGCCATGGCTGCGCAGGCCAAACGCCTCGT
CTTGTTCCATCACGAGCCACGCTACAACGATGCAATGATTCGTGAGTTGGAGCAGGCTTCGCAGGCGATTTTTGCCAACA
CCACTGCCGCCTACGAAGGCTTAACAATCGAAATCTAA

Upstream 100 bases:

>100_bases
AGGAATACAACCCTAAAGGAGCAACCGGCTATGGGGTGCGCCTCTTGACGGAATTGCTGCGCGAGTGGAGTGGCGTTTCG
TTATAGCGGGAGTGTGGTCT

Downstream 100 bases:

>100_bases
CATGAATGGATGCAAGGCCAATCGTGGTATGCTGAGGCTGCTACGATTGGCTTTTTTTGTTGATGAGGAATTGGCATGTC
TCCACGGCGCGATGTCCGAG

Product: hypothetical protein

Products: NA

Alternate protein names: RNase Z; tRNA 3 endonuclease; tRNase Z [H]

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MAGTMRVTFWGVRGSYPVPGSDTVGFGGNTPCVEVEANGHTIILDAGTGIVRLGNDLLRRAKERGGPVRATLLFSHMHHD
HTQGFPFFTPAYVGSSILNIFGPRVFERDLEETLAHSMLPPSFPVSLGEMNSLKFMRNMTETDVLLFDANQDTVTVKNFY
HDQITDDPDVVQIRAMRSYAHPEGVFIYRVQWQGKSVVYATDTEGYVNTDQRLAAFANQTDLLIHDAQYSEAHYLGHAGY
NATQGWGHSTPQMACAVAMAAQAKRLVLFHHEPRYNDAMIRELEQASQAIFANTTAAYEGLTIEI

Sequences:

>Translated_305_residues
MAGTMRVTFWGVRGSYPVPGSDTVGFGGNTPCVEVEANGHTIILDAGTGIVRLGNDLLRRAKERGGPVRATLLFSHMHHD
HTQGFPFFTPAYVGSSILNIFGPRVFERDLEETLAHSMLPPSFPVSLGEMNSLKFMRNMTETDVLLFDANQDTVTVKNFY
HDQITDDPDVVQIRAMRSYAHPEGVFIYRVQWQGKSVVYATDTEGYVNTDQRLAAFANQTDLLIHDAQYSEAHYLGHAGY
NATQGWGHSTPQMACAVAMAAQAKRLVLFHHEPRYNDAMIRELEQASQAIFANTTAAYEGLTIEI
>Mature_304_residues
AGTMRVTFWGVRGSYPVPGSDTVGFGGNTPCVEVEANGHTIILDAGTGIVRLGNDLLRRAKERGGPVRATLLFSHMHHDH
TQGFPFFTPAYVGSSILNIFGPRVFERDLEETLAHSMLPPSFPVSLGEMNSLKFMRNMTETDVLLFDANQDTVTVKNFYH
DQITDDPDVVQIRAMRSYAHPEGVFIYRVQWQGKSVVYATDTEGYVNTDQRLAAFANQTDLLIHDAQYSEAHYLGHAGYN
ATQGWGHSTPQMACAVAMAAQAKRLVLFHHEPRYNDAMIRELEQASQAIFANTTAAYEGLTIEI

Specific function: Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA [H]

COG id: COG1235

COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily I

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase Z family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR013471 [H]

Pfam domain/function: PF00753 Lactamase_B [H]

EC number: =3.1.26.11 [H]

Molecular weight: Translated: 33860; Mature: 33728

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGTMRVTFWGVRGSYPVPGSDTVGFGGNTPCVEVEANGHTIILDAGTGIVRLGNDLLRR
CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCEECCHHHHHH
AKERGGPVRATLLFSHMHHDHTQGFPFFTPAYVGSSILNIFGPRVFERDLEETLAHSMLP
HHHCCCCEEEEEEEHHHHCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCC
PSFPVSLGEMNSLKFMRNMTETDVLLFDANQDTVTVKNFYHDQITDDPDVVQIRAMRSYA
CCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCEEEEEHHHHC
HPEGVFIYRVQWQGKSVVYATDTEGYVNTDQRLAAFANQTDLLIHDAQYSEAHYLGHAGY
CCCCEEEEEEEECCCEEEEEECCCCCCCCHHHHHHHCCCCEEEEECCCCCCCEEEECCCC
NATQGWGHSTPQMACAVAMAAQAKRLVLFHHEPRYNDAMIRELEQASQAIFANTTAAYEG
CCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHEEECCHHHHCC
LTIEI
EEEEC
>Mature Secondary Structure 
AGTMRVTFWGVRGSYPVPGSDTVGFGGNTPCVEVEANGHTIILDAGTGIVRLGNDLLRR
CCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCEECCHHHHHH
AKERGGPVRATLLFSHMHHDHTQGFPFFTPAYVGSSILNIFGPRVFERDLEETLAHSMLP
HHHCCCCEEEEEEEHHHHCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCC
PSFPVSLGEMNSLKFMRNMTETDVLLFDANQDTVTVKNFYHDQITDDPDVVQIRAMRSYA
CCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCEEEEEHHHHC
HPEGVFIYRVQWQGKSVVYATDTEGYVNTDQRLAAFANQTDLLIHDAQYSEAHYLGHAGY
CCCCEEEEEEEECCCEEEEEECCCCCCCCHHHHHHHCCCCEEEEECCCCCCCEEEECCCC
NATQGWGHSTPQMACAVAMAAQAKRLVLFHHEPRYNDAMIRELEQASQAIFANTTAAYEG
CCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHEEECCHHHHCC
LTIEI
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]