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The map label for this gene is rutD [H]

Identifier: 159896924

GI number: 159896924

Start: 461374

End: 462195

Strand: Reverse

Name: rutD [H]

Synonym: Haur_0392

Alternate gene names: 159896924

Gene position: 462195-461374 (Counterclockwise)

Preceding gene: 159896926

Following gene: 159896923

Centisome position: 7.28

GC content: 51.09

Gene sequence:

>822_bases
ATGAGCGTAATCGTCATTGATGACCAAGTTGTGCATTACGAGACCTTTGGGCGTGGTCGTCCAGTCCTATTTCTCCACGG
CTGGCTCGGTTCGTGGCGATACTGGATGCCGACGATGGAATTCGTCTCCAAAGATTTCCGCACATATTCGTTCGATTTTT
GGGGTTTTGGTGATTCAGATAAAACGAGTACTGCCAAGAGCATTAGCATTACCAATTTCTCTGATCAAGTGATTCGATTT
CTCGATGCGATGGGCATCGATAAGGTTCCACTGGTTGGCCACTCCATGGGCGGCATGGTCGCGCTCAAAACTGCAATCCG
CCACCCCAATCGGATTAGCCGAGTTGCGGCGATTGGTGCTCCGATCGTTGGTACATCGCTTTCAGGCTTGCTCAAACTCA
CCGATAATCAGTATGTTTCGCGAGCGATGGCGCGAGTGCCAGTTGTCACCAAATTTTTGTTTCGCTGGTTCTTAGGCAAT
GTCAACGATACGGCCTATGGCGAAATTCTCGACGATAGCGTGAAGCCCACCGAAGAGAGTTTGCGCCGCGCAGTTGGCTC
GATGATGCGCACCGATTTGCGGCCTGAACTTGAGCAATTGACGATTCCAACCCTGATTATTCATGGTGCTCGCGACGATA
TTGTTAATCCCAATCAGGCCGATATTTTCTTGCAGCGCGATATGGCCAACACCCAAGTGTTTGTAATGCCTGAAAGTCGC
CACTTTCCGTTCCTCGACGAGCCAGCCCAATTTAACAAGGTGCTTCACGCCTTCTTAAAACGGCCAGTCAATGAGGCCCG
CGCTGCGGCAGAAGCGGCATAG

Upstream 100 bases:

>100_bases
TCAACCATGAACCAATTGTTGCTGGCAATACCGCGTTGCCGAGCTTTAGGCGGTATGGTATAGTTTGGTTGACAGCAGTC
TGCAACGTGAGAGCATCACC

Downstream 100 bases:

>100_bases
TAGGTCAAGTTCATGATCGATGAACAAACTGAAGCTTTAGTTCGGCGACTCAAAAGCATCGAAGGCCACGTCCGTGGTGT
TCAACGGATGCTCGAAGAGG

Product: alpha/beta hydrolase fold-domain containing protein

Products: NA

Alternate protein names: Aminohydrolase [H]

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MSVIVIDDQVVHYETFGRGRPVLFLHGWLGSWRYWMPTMEFVSKDFRTYSFDFWGFGDSDKTSTAKSISITNFSDQVIRF
LDAMGIDKVPLVGHSMGGMVALKTAIRHPNRISRVAAIGAPIVGTSLSGLLKLTDNQYVSRAMARVPVVTKFLFRWFLGN
VNDTAYGEILDDSVKPTEESLRRAVGSMMRTDLRPELEQLTIPTLIIHGARDDIVNPNQADIFLQRDMANTQVFVMPESR
HFPFLDEPAQFNKVLHAFLKRPVNEARAAAEAA

Sequences:

>Translated_273_residues
MSVIVIDDQVVHYETFGRGRPVLFLHGWLGSWRYWMPTMEFVSKDFRTYSFDFWGFGDSDKTSTAKSISITNFSDQVIRF
LDAMGIDKVPLVGHSMGGMVALKTAIRHPNRISRVAAIGAPIVGTSLSGLLKLTDNQYVSRAMARVPVVTKFLFRWFLGN
VNDTAYGEILDDSVKPTEESLRRAVGSMMRTDLRPELEQLTIPTLIIHGARDDIVNPNQADIFLQRDMANTQVFVMPESR
HFPFLDEPAQFNKVLHAFLKRPVNEARAAAEAA
>Mature_272_residues
SVIVIDDQVVHYETFGRGRPVLFLHGWLGSWRYWMPTMEFVSKDFRTYSFDFWGFGDSDKTSTAKSISITNFSDQVIRFL
DAMGIDKVPLVGHSMGGMVALKTAIRHPNRISRVAAIGAPIVGTSLSGLLKLTDNQYVSRAMARVPVVTKFLFRWFLGNV
NDTAYGEILDDSVKPTEESLRRAVGSMMRTDLRPELEQLTIPTLIIHGARDDIVNPNQADIFLQRDMANTQVFVMPESRH
FPFLDEPAQFNKVLHAFLKRPVNEARAAAEAA

Specific function: May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation [H]

COG id: COG0596

COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Hydrolase RutD family [H]

Homologues:

Organism=Escherichia coli, GI1787244, Length=244, Percent_Identity=23.3606557377049, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR019913 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 30754; Mature: 30623

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: PS00120 LIPASE_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVIVIDDQVVHYETFGRGRPVLFLHGWLGSWRYWMPTMEFVSKDFRTYSFDFWGFGDSD
CEEEEECCCEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHEEEEEECCCCCCC
KTSTAKSISITNFSDQVIRFLDAMGIDKVPLVGHSMGGMVALKTAIRHPNRISRVAAIGA
CCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCC
PIVGTSLSGLLKLTDNQYVSRAMARVPVVTKFLFRWFLGNVNDTAYGEILDDSVKPTEES
CHHHCCHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCHHHH
LRRAVGSMMRTDLRPELEQLTIPTLIIHGARDDIVNPNQADIFLQRDMANTQVFVMPESR
HHHHHHHHHHHCCCCHHHHHCCCCEEEECCCCCCCCCCCCEEEEEECCCCCEEEEEECCC
HFPFLDEPAQFNKVLHAFLKRPVNEARAAAEAA
CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCC
>Mature Secondary Structure 
SVIVIDDQVVHYETFGRGRPVLFLHGWLGSWRYWMPTMEFVSKDFRTYSFDFWGFGDSD
EEEEECCCEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHEEEEEECCCCCCC
KTSTAKSISITNFSDQVIRFLDAMGIDKVPLVGHSMGGMVALKTAIRHPNRISRVAAIGA
CCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCC
PIVGTSLSGLLKLTDNQYVSRAMARVPVVTKFLFRWFLGNVNDTAYGEILDDSVKPTEES
CHHHCCHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCHHHH
LRRAVGSMMRTDLRPELEQLTIPTLIIHGARDDIVNPNQADIFLQRDMANTQVFVMPESR
HHHHHHHHHHHCCCCHHHHHCCCCEEEECCCCCCCCCCCCEEEEEECCCCCEEEEEECCC
HFPFLDEPAQFNKVLHAFLKRPVNEARAAAEAA
CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA