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The map label for this gene is oppC2 [H]

Identifier: 159896900

GI number: 159896900

Start: 440952

End: 441866

Strand: Reverse

Name: oppC2 [H]

Synonym: Haur_0368

Alternate gene names: 159896900

Gene position: 441866-440952 (Counterclockwise)

Preceding gene: 159896901

Following gene: 159896898

Centisome position: 6.96

GC content: 53.11

Gene sequence:

>915_bases
ATGTTATCGCTAACTGGTGCGCTGACCTCGGCATGGCAGCGCTTGACCCACGGCTCCGCCAAAACGCCAATAATTGAGCA
GCCCGAGCAACGTGCCAAGCCACAACTAAGCCGCAGCGGCAAATTTGCCGCTGGCGGATTGTTGTTTATGCTGATAGCGG
TGATCGTTGGCCCATGGCTCTGGCAGGTTGATCCGCTGGCGCAGAATATTGGGCAGCGTTTAGCCCCGCCATCGTTGAGC
CATCCCCTTGGCAGCGATCAATTTGGCCGTGATGTGCTCGCCCGAATGTTGATTGGCGGGCGTTGGTCGTTGTTTGGAGC
AGGCTTCGTCTGCATTGGCACAAGCTGTTTGGGCTTAGTATTGGGGGCATGCTGTGCCGTGGGGCCGCGTTGGCTCGATT
ATTTGCTGAGTCGGATTACCGAAACCTTCCAAGCAATTCCACCAGTGTTACTAGCCCTCGCCTTGAGCGCAATCCTGTCG
CGTTCGTTTAGCAATTTATTGTTGGCGCTGATTTTGACCAACTGGACGTGGTATGCCCGCATGTATCGCGCCTTGATTCT
CAAAGAATTAGCAATGCCGTACATCGAAGGTGCGCAGGCAATTGGCGTAAAACCGCTGGCGATTTTGTTGCGTCATGTAC
TGCCCAACCTGTTTGGGTCGATGGTCGTGATTGCCACCACCAACTTTGGCAGCGTGATATTGAATCTTTCGGCCTTGTCG
TTTATTGGCTTTGGACTCAACCCACCAACCCCTGAATGGGGCAATTTAATCAACGAATCACGGGCATTTTTTCAACGCGA
ACCACGGCTAATGATTATTCCTGGCCTGTGCATTGCCACAACTGTGCTATGGCTCAACTTGCTTGGTAACGCCCTGCGGG
ATCGGTTGGATCACTATCAAGGGATTAGGGATTAG

Upstream 100 bases:

>100_bases
GTATTTGCCTATCCTGGGGTTGGGCGGATGGCGGTTGAGGCAGCCTTGGTCGGCGATATGCCAGTTTTGGGCTTGTCAGT
CTTGATCGCAGGGGGAATTT

Downstream 100 bases:

>100_bases
AATTTAATGAAGAGGAGTAAAGGCACGAGGCTATTGGAGATTGGTTATAGCTTTTGGTTCACGAGGTTAATCGTTCCCTC
ACCCCAACCCCTCTCCCACA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MLSLTGALTSAWQRLTHGSAKTPIIEQPEQRAKPQLSRSGKFAAGGLLFMLIAVIVGPWLWQVDPLAQNIGQRLAPPSLS
HPLGSDQFGRDVLARMLIGGRWSLFGAGFVCIGTSCLGLVLGACCAVGPRWLDYLLSRITETFQAIPPVLLALALSAILS
RSFSNLLLALILTNWTWYARMYRALILKELAMPYIEGAQAIGVKPLAILLRHVLPNLFGSMVVIATTNFGSVILNLSALS
FIGFGLNPPTPEWGNLINESRAFFQREPRLMIIPGLCIATTVLWLNLLGNALRDRLDHYQGIRD

Sequences:

>Translated_304_residues
MLSLTGALTSAWQRLTHGSAKTPIIEQPEQRAKPQLSRSGKFAAGGLLFMLIAVIVGPWLWQVDPLAQNIGQRLAPPSLS
HPLGSDQFGRDVLARMLIGGRWSLFGAGFVCIGTSCLGLVLGACCAVGPRWLDYLLSRITETFQAIPPVLLALALSAILS
RSFSNLLLALILTNWTWYARMYRALILKELAMPYIEGAQAIGVKPLAILLRHVLPNLFGSMVVIATTNFGSVILNLSALS
FIGFGLNPPTPEWGNLINESRAFFQREPRLMIIPGLCIATTVLWLNLLGNALRDRLDHYQGIRD
>Mature_304_residues
MLSLTGALTSAWQRLTHGSAKTPIIEQPEQRAKPQLSRSGKFAAGGLLFMLIAVIVGPWLWQVDPLAQNIGQRLAPPSLS
HPLGSDQFGRDVLARMLIGGRWSLFGAGFVCIGTSCLGLVLGACCAVGPRWLDYLLSRITETFQAIPPVLLALALSAILS
RSFSNLLLALILTNWTWYARMYRALILKELAMPYIEGAQAIGVKPLAILLRHVLPNLFGSMVVIATTNFGSVILNLSALS
FIGFGLNPPTPEWGNLINESRAFFQREPRLMIIPGLCIATTVLWLNLLGNALRDRLDHYQGIRD

Specific function: Part of a transport system that may be involved in oligopeptide uptake. Probably responsible for the translocation of the substrate across the membrane. Important for S.aureus growth and survival during the infection process [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=223, Percent_Identity=39.4618834080717, Blast_Score=162, Evalue=4e-41,
Organism=Escherichia coli, GI1789889, Length=241, Percent_Identity=31.1203319502075, Blast_Score=144, Evalue=8e-36,
Organism=Escherichia coli, GI1787760, Length=255, Percent_Identity=31.7647058823529, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1789964, Length=253, Percent_Identity=34.7826086956522, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1787549, Length=245, Percent_Identity=32.2448979591837, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1788505, Length=228, Percent_Identity=32.0175438596491, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1787498, Length=272, Percent_Identity=28.6764705882353, Blast_Score=95, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33238; Mature: 33238

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLTGALTSAWQRLTHGSAKTPIIEQPEQRAKPQLSRSGKFAAGGLLFMLIAVIVGPWL
CCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHH
WQVDPLAQNIGQRLAPPSLSHPLGSDQFGRDVLARMLIGGRWSLFGAGFVCIGTSCLGLV
HCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LGACCAVGPRWLDYLLSRITETFQAIPPVLLALALSAILSRSFSNLLLALILTNWTWYAR
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MYRALILKELAMPYIEGAQAIGVKPLAILLRHVLPNLFGSMVVIATTNFGSVILNLSALS
HHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHH
FIGFGLNPPTPEWGNLINESRAFFQREPRLMIIPGLCIATTVLWLNLLGNALRDRLDHYQ
HHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHC
GIRD
CCCC
>Mature Secondary Structure
MLSLTGALTSAWQRLTHGSAKTPIIEQPEQRAKPQLSRSGKFAAGGLLFMLIAVIVGPWL
CCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHH
WQVDPLAQNIGQRLAPPSLSHPLGSDQFGRDVLARMLIGGRWSLFGAGFVCIGTSCLGLV
HCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LGACCAVGPRWLDYLLSRITETFQAIPPVLLALALSAILSRSFSNLLLALILTNWTWYAR
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MYRALILKELAMPYIEGAQAIGVKPLAILLRHVLPNLFGSMVVIATTNFGSVILNLSALS
HHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHH
FIGFGLNPPTPEWGNLINESRAFFQREPRLMIIPGLCIATTVLWLNLLGNALRDRLDHYQ
HHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHC
GIRD
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA