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The map label for this gene is yqhC [H]

Identifier: 159896892

GI number: 159896892

Start: 430875

End: 431816

Strand: Reverse

Name: yqhC [H]

Synonym: Haur_0360

Alternate gene names: 159896892

Gene position: 431816-430875 (Counterclockwise)

Preceding gene: 159896895

Following gene: 159896885

Centisome position: 6.8

GC content: 53.93

Gene sequence:

>942_bases
ATGCCGATGACTCAAGAACACCAAACTGCTTGGGAGCGCCAGCATAGGGCTGCCAACTACGCTGAGATCAGCACACGGAT
CGCCCACATTCTTCCATCCGATGGAATGATTGAACCGCTGCCTGGAGTACATGTCTACCGTGTTTCTGGCCCAACGGAGC
CAATTCATGGGGTAACTGTTCCTGCCTTTTGCGTGATTGTTCAAGGGCGGAAGATGGTGCTATTAGCTGCCGACCAGTAT
CACTATGATCCAGCCCACTACTTGCTCACCACGGCGGCGCTGCCCGTCGTTGGTCAAATTACGGAGGCCACGCCAGAAGC
ACCATATCTGAGTCTTCGGTTTGCACTGTCCCCAGCTCTTATTAGCTCGGTTATGGCCGAGGTGGGAGTAACGCCGGTAG
CAAGTCAAGCATCGGTGCGAGCACTTGCAGTAAGTTCGCTGGATGGAGAATTTATGGATGTGGTGGTACGGCTTGTCCGG
TTATTCAATAGCTCTCGCGACGCGCAGGTTTTGGGGCCGCTGATTATGCGGGAACTGGTTTATCGGCTCTTGATGAGCGA
ACAAGGTATGCGGCTGCGTCAGATTGCAATCATCGGAGGAGCGGAACATCGGATCATGGGTGCGCTTGCCCAAATTCAGC
GTGATTTTCATCAGCCGCTTAGGATTCCTGATCTAGCACAGGCAGTAGGAATGAGTGTCTCTGGGTTCCACAGCCACTTT
AAGGCGGTGACCGCGATGAGTCCAGGTCAGTATCAGCAGCAGTTGCGTCTACAAGAGGCTCGGCGCTTATTATTGAGCGA
AGATCTTGATGCAGCAAGTGTAGGTGCTCGGGTAGGCTATGATGATGCCGCATACTTTACCCGTGCCTACAAACGCCTTT
TTGGAGCGCCGCCAATACGCGATGCGACGCGGATGCGTGCGGTTGTTATGGCTGGTGGTTAG

Upstream 100 bases:

>100_bases
GGCGTATACAAGCTGCATATGGTATGATGATTGTCGTCAATTATTGGACAATTCTCCAGACTATACCTAAAAGATAGAAG
CCACACAGCGAGGTGTAATT

Downstream 100 bases:

>100_bases
TAATGAGATTTTGTTCTTGCTGAAAACCAAGTATCGAGGGTTATGGTTCTAAAACCACAAACGGCTCGCATAATGGAGCC
GCTTGTGGGAGAGAAGAGAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MPMTQEHQTAWERQHRAANYAEISTRIAHILPSDGMIEPLPGVHVYRVSGPTEPIHGVTVPAFCVIVQGRKMVLLAADQY
HYDPAHYLLTTAALPVVGQITEATPEAPYLSLRFALSPALISSVMAEVGVTPVASQASVRALAVSSLDGEFMDVVVRLVR
LFNSSRDAQVLGPLIMRELVYRLLMSEQGMRLRQIAIIGGAEHRIMGALAQIQRDFHQPLRIPDLAQAVGMSVSGFHSHF
KAVTAMSPGQYQQQLRLQEARRLLLSEDLDAASVGARVGYDDAAYFTRAYKRLFGAPPIRDATRMRAVVMAGG

Sequences:

>Translated_313_residues
MPMTQEHQTAWERQHRAANYAEISTRIAHILPSDGMIEPLPGVHVYRVSGPTEPIHGVTVPAFCVIVQGRKMVLLAADQY
HYDPAHYLLTTAALPVVGQITEATPEAPYLSLRFALSPALISSVMAEVGVTPVASQASVRALAVSSLDGEFMDVVVRLVR
LFNSSRDAQVLGPLIMRELVYRLLMSEQGMRLRQIAIIGGAEHRIMGALAQIQRDFHQPLRIPDLAQAVGMSVSGFHSHF
KAVTAMSPGQYQQQLRLQEARRLLLSEDLDAASVGARVGYDDAAYFTRAYKRLFGAPPIRDATRMRAVVMAGG
>Mature_312_residues
PMTQEHQTAWERQHRAANYAEISTRIAHILPSDGMIEPLPGVHVYRVSGPTEPIHGVTVPAFCVIVQGRKMVLLAADQYH
YDPAHYLLTTAALPVVGQITEATPEAPYLSLRFALSPALISSVMAEVGVTPVASQASVRALAVSSLDGEFMDVVVRLVRL
FNSSRDAQVLGPLIMRELVYRLLMSEQGMRLRQIAIIGGAEHRIMGALAQIQRDFHQPLRIPDLAQAVGMSVSGFHSHFK
AVTAMSPGQYQQQLRLQEARRLLLSEDLDAASVGARVGYDDAAYFTRAYKRLFGAPPIRDATRMRAVVMAGG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=252, Percent_Identity=32.9365079365079, Blast_Score=129, Evalue=3e-31,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34320; Mature: 34189

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMTQEHQTAWERQHRAANYAEISTRIAHILPSDGMIEPLPGVHVYRVSGPTEPIHGVTV
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCH
PAFCVIVQGRKMVLLAADQYHYDPAHYLLTTAALPVVGQITEATPEAPYLSLRFALSPAL
HHHHEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHH
ISSVMAEVGVTPVASQASVRALAVSSLDGEFMDVVVRLVRLFNSSRDAQVLGPLIMRELV
HHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
YRLLMSEQGMRLRQIAIIGGAEHRIMGALAQIQRDFHQPLRIPDLAQAVGMSVSGFHSHF
HHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHH
KAVTAMSPGQYQQQLRLQEARRLLLSEDLDAASVGARVGYDDAAYFTRAYKRLFGAPPIR
HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCC
DATRMRAVVMAGG
HHHHHEEEEEECC
>Mature Secondary Structure 
PMTQEHQTAWERQHRAANYAEISTRIAHILPSDGMIEPLPGVHVYRVSGPTEPIHGVTV
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCH
PAFCVIVQGRKMVLLAADQYHYDPAHYLLTTAALPVVGQITEATPEAPYLSLRFALSPAL
HHHHEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHH
ISSVMAEVGVTPVASQASVRALAVSSLDGEFMDVVVRLVRLFNSSRDAQVLGPLIMRELV
HHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
YRLLMSEQGMRLRQIAIIGGAEHRIMGALAQIQRDFHQPLRIPDLAQAVGMSVSGFHSHF
HHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHH
KAVTAMSPGQYQQQLRLQEARRLLLSEDLDAASVGARVGYDDAAYFTRAYKRLFGAPPIR
HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCC
DATRMRAVVMAGG
HHHHHEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]