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The map label for this gene is ybiA [H]

Identifier: 159896886

GI number: 159896886

Start: 424368

End: 424814

Strand: Direct

Name: ybiA [H]

Synonym: Haur_0354

Alternate gene names: 159896886

Gene position: 424368-424814 (Clockwise)

Preceding gene: 159896884

Following gene: 159896887

Centisome position: 6.69

GC content: 49.22

Gene sequence:

>447_bases
ATGACTATTTACTTTTACGCGGTTTCAGCAGAATTTGGTTGCTTCTCGAACTTTTCGGCCCATGGATTTAAGCTCGATGG
CCACTACTGGCCCACCAGTGAGCATTATTTTCAAGCCCAAAAATTTACTGGCACTGACTATGCTACAACCATTCGGCTAG
CTAAATCGCCAGCAATTGCCGCCCGACTGGGACGCAGCCGCAAACAACCATTACGCCGCGATTGGGAAGCGATCAAAGAT
GCGGTGATGCGACGCGCCTTGTTGGCAAAATTCCGTAGCCACGCTGAGATTCGGGCAATTTTGCTCGCAACCGACGATCA
GCCGCTGGTCGAGAATGCACCCAATGATTATTATTGGGGCTGTGGAATTGATGGCTCAGGCAAAAATATGCTTGGTCAAT
TGTTAGTCGAAATTCGCCAAACCCTACGTGATGAGGACGTTGCATGA

Upstream 100 bases:

>100_bases
CATCAGTCGCAAGATGCAGCTTAAATCGGTCGAGTGCCGATGGCAATTGGGTGTCAATTGCGCAAAAATAGCATATCAAA
TTTTGGCATGGAGTACAATC

Downstream 100 bases:

>100_bases
GCCATGCCCGCTTTTCTATTGAGCAGTTACATCATTTTCAATGTGGCGCATGTAGCGGTTGGTGGAGCATCGCCGATGCT
CCGCCCCGCGATCATTGGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 147

Protein sequence:

>148_residues
MTIYFYAVSAEFGCFSNFSAHGFKLDGHYWPTSEHYFQAQKFTGTDYATTIRLAKSPAIAARLGRSRKQPLRRDWEAIKD
AVMRRALLAKFRSHAEIRAILLATDDQPLVENAPNDYYWGCGIDGSGKNMLGQLLVEIRQTLRDEDVA

Sequences:

>Translated_148_residues
MTIYFYAVSAEFGCFSNFSAHGFKLDGHYWPTSEHYFQAQKFTGTDYATTIRLAKSPAIAARLGRSRKQPLRRDWEAIKD
AVMRRALLAKFRSHAEIRAILLATDDQPLVENAPNDYYWGCGIDGSGKNMLGQLLVEIRQTLRDEDVA
>Mature_147_residues
TIYFYAVSAEFGCFSNFSAHGFKLDGHYWPTSEHYFQAQKFTGTDYATTIRLAKSPAIAARLGRSRKQPLRRDWEAIKDA
VMRRALLAKFRSHAEIRAILLATDDQPLVENAPNDYYWGCGIDGSGKNMLGQLLVEIRQTLRDEDVA

Specific function: Required for swarming motility [H]

COG id: COG3236

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ybiA family [H]

Homologues:

Organism=Escherichia coli, GI1787017, Length=140, Percent_Identity=57.1428571428571, Blast_Score=170, Evalue=5e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012816 [H]

Pfam domain/function: PF08719 DUF1768 [H]

EC number: NA

Molecular weight: Translated: 16809; Mature: 16678

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIYFYAVSAEFGCFSNFSAHGFKLDGHYWPTSEHYFQAQKFTGTDYATTIRLAKSPAIA
CEEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCHHEEECCCCCCCHHEEEEECCCCHHH
ARLGRSRKQPLRRDWEAIKDAVMRRALLAKFRSHAEIRAILLATDDQPLVENAPNDYYWG
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHCCCCCCEEE
CGIDGSGKNMLGQLLVEIRQTLRDEDVA
CCCCCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TIYFYAVSAEFGCFSNFSAHGFKLDGHYWPTSEHYFQAQKFTGTDYATTIRLAKSPAIA
EEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCHHEEECCCCCCCHHEEEEECCCCHHH
ARLGRSRKQPLRRDWEAIKDAVMRRALLAKFRSHAEIRAILLATDDQPLVENAPNDYYWG
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHCCCCCCEEE
CGIDGSGKNMLGQLLVEIRQTLRDEDVA
CCCCCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]