Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159896885

Identifier: 159896885

GI number: 159896885

Start: 423595

End: 424140

Strand: Reverse

Name: 159896885

Synonym: Haur_0353

Alternate gene names: NA

Gene position: 424140-423595 (Counterclockwise)

Preceding gene: 159896892

Following gene: 159896869

Centisome position: 6.68

GC content: 43.59

Gene sequence:

>546_bases
ATGACTCAACCATTTTATAAAATTTGCCCAACCTGTAACACCCAAACCCATCCTGATGTGATGTTTTGTACCAATTGTGG
AGGTTCGTTGCAAGGCAGTCCAGTCCATGGCGCTCAAACTGTGGCCTATCAACAAAATTCTACTCCTGCCCAACCAGGCT
ATCAACAATATAGCCAGCCAGTTCAGCCACCACCAATGTATCAAGCCAACTATCAACAACCAATCGCCCCTTACCAACAG
CCCAATCAATATCAATATCAAGTGCCTCAAGGCTATGCCTACACTGAGAAAAACAAAGTTGTCGCAGCCTTATTAGCCTT
TTTCTTGGGGCCATTAGGGATTCACGGGTTTTATCTGGGCAATAGTCAGATGGGGTTAATTTTGCTCTTGTCGAACGTAG
TGTTTCTGCCGTTATCCTGTTTTGGGATTGGGCTTTTGGGCTATGCCTTAACCGGAATAATCTGTTTGGTGCAAACAGTA
CTTTATTTAGTCGCTTCTGATGCTGAGTTTTATCAGAAGTATGTGGTTCAAAAAAGCTGGTTCTAG

Upstream 100 bases:

>100_bases
TGGTTGAAACAAAAGATCTTTTAAAAACGTCTTAAAGCTAGCTATGATGACACAAAAAATATGATTTAACTGTGCTGTTA
TTGGCACTAAGGAATGCGTT

Downstream 100 bases:

>100_bases
ACAGCTTAATTGCGCTTCGGCGCTGCTAGTAGCTATCGTATGGTTTGGCTATAATTGGAGCTAGCGATATGTTGCAATGG
CTATTGCAAGCTGGTCGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MTQPFYKICPTCNTQTHPDVMFCTNCGGSLQGSPVHGAQTVAYQQNSTPAQPGYQQYSQPVQPPPMYQANYQQPIAPYQQ
PNQYQYQVPQGYAYTEKNKVVAALLAFFLGPLGIHGFYLGNSQMGLILLLSNVVFLPLSCFGIGLLGYALTGIICLVQTV
LYLVASDAEFYQKYVVQKSWF

Sequences:

>Translated_181_residues
MTQPFYKICPTCNTQTHPDVMFCTNCGGSLQGSPVHGAQTVAYQQNSTPAQPGYQQYSQPVQPPPMYQANYQQPIAPYQQ
PNQYQYQVPQGYAYTEKNKVVAALLAFFLGPLGIHGFYLGNSQMGLILLLSNVVFLPLSCFGIGLLGYALTGIICLVQTV
LYLVASDAEFYQKYVVQKSWF
>Mature_180_residues
TQPFYKICPTCNTQTHPDVMFCTNCGGSLQGSPVHGAQTVAYQQNSTPAQPGYQQYSQPVQPPPMYQANYQQPIAPYQQP
NQYQYQVPQGYAYTEKNKVVAALLAFFLGPLGIHGFYLGNSQMGLILLLSNVVFLPLSCFGIGLLGYALTGIICLVQTVL
YLVASDAEFYQKYVVQKSWF

Specific function: Unknown

COG id: COG2314

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20086; Mature: 19955

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPFYKICPTCNTQTHPDVMFCTNCGGSLQGSPVHGAQTVAYQQNSTPAQPGYQQYSQP
CCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHCCC
VQPPPMYQANYQQPIAPYQQPNQYQYQVPQGYAYTEKNKVVAALLAFFLGPLGIHGFYLG
CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEC
NSQMGLILLLSNVVFLPLSCFGIGLLGYALTGIICLVQTVLYLVASDAEFYQKYVVQKSW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
F
C
>Mature Secondary Structure 
TQPFYKICPTCNTQTHPDVMFCTNCGGSLQGSPVHGAQTVAYQQNSTPAQPGYQQYSQP
CCCHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHCCC
VQPPPMYQANYQQPIAPYQQPNQYQYQVPQGYAYTEKNKVVAALLAFFLGPLGIHGFYLG
CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEC
NSQMGLILLLSNVVFLPLSCFGIGLLGYALTGIICLVQTVLYLVASDAEFYQKYVVQKSW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
F
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA