Click here to switch to the map view.

The map label for this gene is ycjO [C]

Identifier: 159896832

GI number: 159896832

Start: 357273

End: 358250

Strand: Direct

Name: ycjO [C]

Synonym: Haur_0299

Alternate gene names: 159896832

Gene position: 357273-358250 (Clockwise)

Preceding gene: 159896831

Following gene: 159896833

Centisome position: 5.63

GC content: 48.16

Gene sequence:

>978_bases
ATGGCTCTGGCACCAAAAAAAAATAAACTCTCACTCTGGCAACGGATTCGGCAAAACAGCCTAGCATATAAATTTATCGC
TCCAACCTTTGTGGCGATGATGATTGTGCACTTGATTCCGATTGTCCAAGGGTTGTATCTTTCACTCCTCGATGTTCGCC
TTACAACCTTAACCCTCTATCTCAAAGCACCATTTGTTGGGCTAAAATACTACATCGAAGTCTTCAACGCGATCTTTGGC
ATTGGTGAAGCTGGCGCAAGCTCGCGGGTAACAGGCCTAATTAATGCTGCCTCAAATACATTAGTCTATACCATTTGGAC
CAATATTGGCACACTCGGCTTGGGCTTGATTCTGGCCATGCTGCTGAATCGTGAATTCCGCTGGCGTGGGATTGCCCGCA
CCCTCGTGTTGTTGCCGTGGGTTGTGCCAACCTTCGTGACTGGGACAATCTTCAACTTTATTTGGCTCGAACAAGGTGGC
CTTGCCAATAAAATCTTGCTTGGCTTGAATATCGTTGATACCCCAGTAACTTGGTTGATTGGCCCGAATTCCTTGTATGC
TTTGGTGATTGCCACGGTTTGGCGTGGTTTACCCTTCACCACAATTATGTTCCTCGCGGCAATTCAGGTGATTCCAACCG
ACCTCTATGAAGCAGCTTCGCTCGATGGAGCTAACGGCTGGCAGCGCTTTCGCCATATTACCTTGCCGTTGATTAAGCCA
ATTGCCGGAACCCAAGTGTTGTTTGGCTTGATTAACGGTTTCTATGGTGGCTATAATATTGCCGTGCAAATGTTCGGCGG
TGGTACCGGTTTCGCAGGCGAATACGCCGACTTGCTCGTACCAGCAATTACTCGCCAAACATGGGAACGTCACTTATATG
GATTTGGTTCGGCAGCCTCAGTGATTCTGATGGGCATGCTGTTGGTCTTTGTTGGCATTTGGTATCGTGCATTCCGCGAT
AGCTTGCGGGCTGAATAA

Upstream 100 bases:

>100_bases
CAACGAATTGTTGGGTAACTAATCGGACGAGTGACGTGGCGCAGGGTGTTTGCTCACTGCGCCACGCCCACCACTGCATC
CACGCAATGGAGCGACGTTT

Downstream 100 bases:

>100_bases
GGAGGCCGTTTATGGGTGTTTCGCTCAGTAAAAAGGCCGAATCGGCCCGACCTGCACGCGCAACGATCAATTACAAAGCA
TGGTTACTTGATCGTGGTGG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MALAPKKNKLSLWQRIRQNSLAYKFIAPTFVAMMIVHLIPIVQGLYLSLLDVRLTTLTLYLKAPFVGLKYYIEVFNAIFG
IGEAGASSRVTGLINAASNTLVYTIWTNIGTLGLGLILAMLLNREFRWRGIARTLVLLPWVVPTFVTGTIFNFIWLEQGG
LANKILLGLNIVDTPVTWLIGPNSLYALVIATVWRGLPFTTIMFLAAIQVIPTDLYEAASLDGANGWQRFRHITLPLIKP
IAGTQVLFGLINGFYGGYNIAVQMFGGGTGFAGEYADLLVPAITRQTWERHLYGFGSAASVILMGMLLVFVGIWYRAFRD
SLRAE

Sequences:

>Translated_325_residues
MALAPKKNKLSLWQRIRQNSLAYKFIAPTFVAMMIVHLIPIVQGLYLSLLDVRLTTLTLYLKAPFVGLKYYIEVFNAIFG
IGEAGASSRVTGLINAASNTLVYTIWTNIGTLGLGLILAMLLNREFRWRGIARTLVLLPWVVPTFVTGTIFNFIWLEQGG
LANKILLGLNIVDTPVTWLIGPNSLYALVIATVWRGLPFTTIMFLAAIQVIPTDLYEAASLDGANGWQRFRHITLPLIKP
IAGTQVLFGLINGFYGGYNIAVQMFGGGTGFAGEYADLLVPAITRQTWERHLYGFGSAASVILMGMLLVFVGIWYRAFRD
SLRAE
>Mature_324_residues
ALAPKKNKLSLWQRIRQNSLAYKFIAPTFVAMMIVHLIPIVQGLYLSLLDVRLTTLTLYLKAPFVGLKYYIEVFNAIFGI
GEAGASSRVTGLINAASNTLVYTIWTNIGTLGLGLILAMLLNREFRWRGIARTLVLLPWVVPTFVTGTIFNFIWLEQGGL
ANKILLGLNIVDTPVTWLIGPNSLYALVIATVWRGLPFTTIMFLAAIQVIPTDLYEAASLDGANGWQRFRHITLPLIKPI
AGTQVLFGLINGFYGGYNIAVQMFGGGTGFAGEYADLLVPAITRQTWERHLYGFGSAASVILMGMLLVFVGIWYRAFRDS
LRAE

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane (Probable) [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=218, Percent_Identity=33.4862385321101, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1790465, Length=222, Percent_Identity=33.3333333333333, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1789861, Length=312, Percent_Identity=24.3589743589744, Blast_Score=79, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35969; Mature: 35838

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALAPKKNKLSLWQRIRQNSLAYKFIAPTFVAMMIVHLIPIVQGLYLSLLDVRLTTLTLY
CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKAPFVGLKYYIEVFNAIFGIGEAGASSRVTGLINAASNTLVYTIWTNIGTLGLGLILAM
HHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHEECCCCCEEEEEHHCHHHHHHHHHHHH
LLNREFRWRGIARTLVLLPWVVPTFVTGTIFNFIWLEQGGLANKILLGLNIVDTPVTWLI
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHEEECEEECCCEEEEE
GPNSLYALVIATVWRGLPFTTIMFLAAIQVIPTDLYEAASLDGANGWQRFRHITLPLIKP
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
IAGTQVLFGLINGFYGGYNIAVQMFGGGTGFAGEYADLLVPAITRQTWERHLYGFGSAAS
CCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
VILMGMLLVFVGIWYRAFRDSLRAE
HHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ALAPKKNKLSLWQRIRQNSLAYKFIAPTFVAMMIVHLIPIVQGLYLSLLDVRLTTLTLY
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKAPFVGLKYYIEVFNAIFGIGEAGASSRVTGLINAASNTLVYTIWTNIGTLGLGLILAM
HHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHEECCCCCEEEEEHHCHHHHHHHHHHHH
LLNREFRWRGIARTLVLLPWVVPTFVTGTIFNFIWLEQGGLANKILLGLNIVDTPVTWLI
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHEEECEEECCCEEEEE
GPNSLYALVIATVWRGLPFTTIMFLAAIQVIPTDLYEAASLDGANGWQRFRHITLPLIKP
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
IAGTQVLFGLINGFYGGYNIAVQMFGGGTGFAGEYADLLVPAITRQTWERHLYGFGSAAS
CCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
VILMGMLLVFVGIWYRAFRDSLRAE
HHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA