Click here to switch to the map view.

The map label for this gene is rpsT [H]

Identifier: 159896823

GI number: 159896823

Start: 342409

End: 342630

Strand: Reverse

Name: rpsT [H]

Synonym: Haur_0290

Alternate gene names: 159896823

Gene position: 342630-342409 (Counterclockwise)

Preceding gene: 159896826

Following gene: 159896820

Centisome position: 5.4

GC content: 49.55

Gene sequence:

>222_bases
ATGGTGCGCTCAGCACTCAAAACCTTGGTCAAAAAATCAGCCCAAAGCGTCAATGCCAAAAACGAAGCTAGCAAAGAATC
ATTGGCAGCAGCGTTGAAGGCGCTTGATCAAGCAGCCGCTAAAGGCATCATTCACAAAAACCAAGCTGCCCGCCGTAAAT
CACGGTTGGTTCGCCGATTTAACATTGCTAACGGCATCGGCACGCGCACCACTGTGCAATAA

Upstream 100 bases:

>100_bases
TTTCTTATGATACCAAACCTTCGAGGAGGTCACGTTGGCTAATACAGCTTCCGCCCGCAAACGTATTCGGACAAATGCTC
GCCGCCATAACCGCAACGTC

Downstream 100 bases:

>100_bases
GCTGCGCCATTTTTAGCAATTCTCTGCAACGAAAGCCCTATTTTGGGCTTTTTTGCGTTAATCTGGGAATCAGTTGTTGG
GGGTTGGGGGCTAGTTTTAA

Product: 30S ribosomal protein S20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 73; Mature: 73

Protein sequence:

>73_residues
MVRSALKTLVKKSAQSVNAKNEASKESLAAALKALDQAAAKGIIHKNQAARRKSRLVRRFNIANGIGTRTTVQ

Sequences:

>Translated_73_residues
MVRSALKTLVKKSAQSVNAKNEASKESLAAALKALDQAAAKGIIHKNQAARRKSRLVRRFNIANGIGTRTTVQ
>Mature_73_residues
MVRSALKTLVKKSAQSVNAKNEASKESLAAALKALDQAAAKGIIHKNQAARRKSRLVRRFNIANGIGTRTTVQ

Specific function: Binds directly to 16S ribosomal RNA [H]

COG id: COG0268

COG function: function code J; Ribosomal protein S20

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S20P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002583
- ProDom:   PD004231 [H]

Pfam domain/function: PF01649 Ribosomal_S20p [H]

EC number: NA

Molecular weight: Translated: 7857; Mature: 7857

Theoretical pI: Translated: 12.43; Mature: 12.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRSALKTLVKKSAQSVNAKNEASKESLAAALKALDQAAAKGIIHKNQAARRKSRLVRRF
CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NIANGIGTRTTVQ
HHHCCCCCCCCCC
>Mature Secondary Structure
MVRSALKTLVKKSAQSVNAKNEASKESLAAALKALDQAAAKGIIHKNQAARRKSRLVRRF
CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NIANGIGTRTTVQ
HHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]