| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159896802
Identifier: 159896802
GI number: 159896802
Start: 317238
End: 319427
Strand: Direct
Name: 159896802
Synonym: Haur_0269
Alternate gene names: NA
Gene position: 317238-319427 (Clockwise)
Preceding gene: 159896800
Following gene: 159896812
Centisome position: 5.0
GC content: 51.42
Gene sequence:
>2190_bases ATGCAACGCATTGGCTTTCCAACCTTCACTACACCATTGATTGGCCGCGATGCCGATGTTGCAGCGCTAGTAACACGTTT GCGCCAATCGCCAACCCGTTTTACCACTTTGCTCGGCCCAAGTGGCACTGGCAAAACCCGCCTGAGCATTCAAATTGCTG ATCGTTTGCACGCTGAGTTTCGTGATGGCGTGGCCTTTATTTCGTTAGCAACCCTCGACGACCCCGATTTGGTGATTCCA ACAATTGCCCGCACATTTGGCTTGGCTGAACGCGGCAGTTTGGTGTATGAAGAAGCTTTAGTGCAATTTTTACGCGAACG TCAATACTTAATTGTGCTCGATAATATGGAGCAAGTGATCGAGGCTGCGCCGCATGTGATTGGCTTGCTCAGCCAAACCG AGCATGTGCGAGTGCTGGTAACCAGCCAACAAGCTGCTAATGATCCCCAAGAAGAAGTTATTCCAATTCCACCATTGGCG ATTCCGCTAGGCGGTGGCTCAGTCCAAATCGAAACTATCAGCATGAGTCCAGCGGTGGCACTCTTTTTGGATCGGATTCG GCGCGTGCGACCCGAATTTATGCTTGATCCCAATAATGCGTTGCATATTGTCGAGATTTGTCGGCGTTTGCGCGGCTTGC CCTTGGCGATTGAGTTGGTAGCAGCGCATAGCGATAAACTACGCCCCGCCGATTTGCTCTTGTTGTTGCGCAATTATCTG CCTGCTGAGCAAAATGTGGGAGCCGCGCCAGCCCCCGAACAAGTGTTACACCCCGTTTTGGATTGGTGTATTTCGTATAG TATTCCGGCGATTCGCTGGTTGTTGCCGCGCTTGGGGGTCTTTCAAGGCGAATGGACGCTGAACCAAGTTCAATTATTGG CCAACGAAGCGCCTAACACAATTGATATTGCCAAAACGCTCGAAGCTATGGTTGCCAAAGGCCTGCTGCTGAGCAACGCC GCCTCAGAAGAACCAACCTATAGCATGCTCGATACAATTCGCCAATATGCGGCCCGCCAACTCAAGCGCAATGCCCAACT CGACCATGCTTGTCACGAGCTGCATGCGAAGGCTTTTCAACAATTGGCAATCGATATTGATACTGGCATTCGCCAAGGTC AAGGCATGGTCTGGAGCAAATGTCTGAATCAAGCGATGCCCAATGTGCGCAGTGCTTTGCAATGGCTATATCAACAACAA CGCTACAGCGAGATTGCCCGCTTAATTTCGAGCATGGTATTGCCGTTGTTTCAACAAGGCTACATTCGCGAAGGATTAAG CTGGATCGCCCGCATTGGGGCACATGCTGCTAGCTTCGAGCCGGAAATTCAACTGCATTTTGGCTATGCCAATGGGCTGC TTTCCTATGCAATCAGCGATTATCCCTCGGCCTTGCAGGCCTATGGTGCGGCGCTGACCCATGCCAAAACCCTCGGCGAT TTGGATTATCAAGCGCGTTTGTTGAACAATCAAGGCATGATTTACGCCGAGCAAACCAATTATGAGGCGGCCCGCCAAGC CTATGAAGCGGCCTTAACGATTCGCCAACAACAATCCAATGTTTGGGGCGAGGCGATTATTTTGAACAATCTTGGCTCAG TCACCCAATTTCAAGCTGAACACCAAGCCGCTCGTGAGTATTTCCAAGCAAGTTTGGCAATTTACCAGCAAATGGGTGAC CAAATGAGCCAAGCAGTCTCGTTTCAAAATATTGCTGGCACCCATTTGAATATGCACGAATATGCCGAGGCTGAGCACTT ATATCGTGAGAGCATCGCGATTCATCGCCAAAACGAAGAATCGCCACCATTAATTATGGCCTTGTATGGGTTGGGTTTGG CCTTGCTGCGCCAGAATGCTGATGAACGACGTGAATCGGGCGAAGTGCTGCATCAAGCAGTCACGATGGCGGCGCGACTG AATGTCCAACGTTCATTGGCGATTGCTTTCGAAGGCTTTGCTGAATGGTTGGCGACTAGTAACCCTGAGCATGCGGCCTA TTTGGTCGGCGGTGCGGCCAGTTTGCGTAATGCCTGCGATGTTGGCTACTCAGCAGTTAGTTGGCGCGACATAACCAGCT TGCGCGAACAGCTTGATCGCAACTTGGGTCAGGCTGAGCGGCAAGCCGCCGAAGCCACAGGCGAAGCCTTGAGCCAAGCC GAATTGCTGCTGCTGGTTTCTCAAGCCTGA
Upstream 100 bases:
>100_bases GTCCTAGTACGATTGGCAGATTTAGCCTAGGCTAGACCTTTGTTTTTACAGCGGTTTTGCGGCATACTCGACAAACAACC AAACTACGGGAGATCAGGTT
Downstream 100 bases:
>100_bases TTTGGCTCTAAATCGAGCAGCCAACAGCGTAACAGCGTGGCTAATTGTTCGCGCTGCTCGCTACTCAAACTGGCAATCAA GCGTTGTTCGTTGGCTAGAT
Product: TPR repeat-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 729; Mature: 729
Protein sequence:
>729_residues MQRIGFPTFTTPLIGRDADVAALVTRLRQSPTRFTTLLGPSGTGKTRLSIQIADRLHAEFRDGVAFISLATLDDPDLVIP TIARTFGLAERGSLVYEEALVQFLRERQYLIVLDNMEQVIEAAPHVIGLLSQTEHVRVLVTSQQAANDPQEEVIPIPPLA IPLGGGSVQIETISMSPAVALFLDRIRRVRPEFMLDPNNALHIVEICRRLRGLPLAIELVAAHSDKLRPADLLLLLRNYL PAEQNVGAAPAPEQVLHPVLDWCISYSIPAIRWLLPRLGVFQGEWTLNQVQLLANEAPNTIDIAKTLEAMVAKGLLLSNA ASEEPTYSMLDTIRQYAARQLKRNAQLDHACHELHAKAFQQLAIDIDTGIRQGQGMVWSKCLNQAMPNVRSALQWLYQQQ RYSEIARLISSMVLPLFQQGYIREGLSWIARIGAHAASFEPEIQLHFGYANGLLSYAISDYPSALQAYGAALTHAKTLGD LDYQARLLNNQGMIYAEQTNYEAARQAYEAALTIRQQQSNVWGEAIILNNLGSVTQFQAEHQAAREYFQASLAIYQQMGD QMSQAVSFQNIAGTHLNMHEYAEAEHLYRESIAIHRQNEESPPLIMALYGLGLALLRQNADERRESGEVLHQAVTMAARL NVQRSLAIAFEGFAEWLATSNPEHAAYLVGGAASLRNACDVGYSAVSWRDITSLREQLDRNLGQAERQAAEATGEALSQA ELLLLVSQA
Sequences:
>Translated_729_residues MQRIGFPTFTTPLIGRDADVAALVTRLRQSPTRFTTLLGPSGTGKTRLSIQIADRLHAEFRDGVAFISLATLDDPDLVIP TIARTFGLAERGSLVYEEALVQFLRERQYLIVLDNMEQVIEAAPHVIGLLSQTEHVRVLVTSQQAANDPQEEVIPIPPLA IPLGGGSVQIETISMSPAVALFLDRIRRVRPEFMLDPNNALHIVEICRRLRGLPLAIELVAAHSDKLRPADLLLLLRNYL PAEQNVGAAPAPEQVLHPVLDWCISYSIPAIRWLLPRLGVFQGEWTLNQVQLLANEAPNTIDIAKTLEAMVAKGLLLSNA ASEEPTYSMLDTIRQYAARQLKRNAQLDHACHELHAKAFQQLAIDIDTGIRQGQGMVWSKCLNQAMPNVRSALQWLYQQQ RYSEIARLISSMVLPLFQQGYIREGLSWIARIGAHAASFEPEIQLHFGYANGLLSYAISDYPSALQAYGAALTHAKTLGD LDYQARLLNNQGMIYAEQTNYEAARQAYEAALTIRQQQSNVWGEAIILNNLGSVTQFQAEHQAAREYFQASLAIYQQMGD QMSQAVSFQNIAGTHLNMHEYAEAEHLYRESIAIHRQNEESPPLIMALYGLGLALLRQNADERRESGEVLHQAVTMAARL NVQRSLAIAFEGFAEWLATSNPEHAAYLVGGAASLRNACDVGYSAVSWRDITSLREQLDRNLGQAERQAAEATGEALSQA ELLLLVSQA >Mature_729_residues MQRIGFPTFTTPLIGRDADVAALVTRLRQSPTRFTTLLGPSGTGKTRLSIQIADRLHAEFRDGVAFISLATLDDPDLVIP TIARTFGLAERGSLVYEEALVQFLRERQYLIVLDNMEQVIEAAPHVIGLLSQTEHVRVLVTSQQAANDPQEEVIPIPPLA IPLGGGSVQIETISMSPAVALFLDRIRRVRPEFMLDPNNALHIVEICRRLRGLPLAIELVAAHSDKLRPADLLLLLRNYL PAEQNVGAAPAPEQVLHPVLDWCISYSIPAIRWLLPRLGVFQGEWTLNQVQLLANEAPNTIDIAKTLEAMVAKGLLLSNA ASEEPTYSMLDTIRQYAARQLKRNAQLDHACHELHAKAFQQLAIDIDTGIRQGQGMVWSKCLNQAMPNVRSALQWLYQQQ RYSEIARLISSMVLPLFQQGYIREGLSWIARIGAHAASFEPEIQLHFGYANGLLSYAISDYPSALQAYGAALTHAKTLGD LDYQARLLNNQGMIYAEQTNYEAARQAYEAALTIRQQQSNVWGEAIILNNLGSVTQFQAEHQAAREYFQASLAIYQQMGD QMSQAVSFQNIAGTHLNMHEYAEAEHLYRESIAIHRQNEESPPLIMALYGLGLALLRQNADERRESGEVLHQAVTMAARL NVQRSLAIAFEGFAEWLATSNPEHAAYLVGGAASLRNACDVGYSAVSWRDITSLREQLDRNLGQAERQAAEATGEALSQA ELLLLVSQA
Specific function: Unknown
COG id: COG3903
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000767 - InterPro: IPR016032 - InterPro: IPR011990 - InterPro: IPR000792 - InterPro: IPR011991 [H]
Pfam domain/function: PF00196 GerE [H]
EC number: NA
Molecular weight: Translated: 80793; Mature: 80793
Theoretical pI: Translated: 5.59; Mature: 5.59
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRIGFPTFTTPLIGRDADVAALVTRLRQSPTRFTTLLGPSGTGKTRLSIQIADRLHAEF CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEEHHHHHHHH RDGVAFISLATLDDPDLVIPTIARTFGLAERGSLVYEEALVQFLRERQYLIVLDNMEQVI HCCEEEEEEEECCCCCCHHHHHHHHHCCHHCCCHHHHHHHHHHHHCCCEEEEECCHHHHH EAAPHVIGLLSQTEHVRVLVTSQQAANDPQEEVIPIPPLAIPLGGGSVQIETISMSPAVA HHHHHHHHHHCCCCEEEEEEECCHHCCCCHHCEECCCCEEEEECCCEEEEEEEECCHHHH LFLDRIRRVRPEFMLDPNNALHIVEICRRLRGLPLAIELVAAHSDKLRPADLLLLLRNYL HHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHC PAEQNVGAAPAPEQVLHPVLDWCISYSIPAIRWLLPRLGVFQGEWTLNQVQLLANEAPNT CCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCH IDIAKTLEAMVAKGLLLSNAASEEPTYSMLDTIRQYAARQLKRNAQLDHACHELHAKAFQ HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH QLAIDIDTGIRQGQGMVWSKCLNQAMPNVRSALQWLYQQQRYSEIARLISSMVLPLFQQG HHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YIREGLSWIARIGAHAASFEPEIQLHFGYANGLLSYAISDYPSALQAYGAALTHAKTLGD HHHHHHHHHHHHHCHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LDYQARLLNNQGMIYAEQTNYEAARQAYEAALTIRQQQSNVWGEAIILNNLGSVTQFQAE CCHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHH HQAAREYFQASLAIYQQMGDQMSQAVSFQNIAGTHLNMHEYAEAEHLYRESIAIHRQNEE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC SPPLIMALYGLGLALLRQNADERRESGEVLHQAVTMAARLNVQRSLAIAFEGFAEWLATS CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NPEHAAYLVGGAASLRNACDVGYSAVSWRDITSLREQLDRNLGQAERQAAEATGEALSQA CCCCEEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH ELLLLVSQA HHHEEEECC >Mature Secondary Structure MQRIGFPTFTTPLIGRDADVAALVTRLRQSPTRFTTLLGPSGTGKTRLSIQIADRLHAEF CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEEHHHHHHHH RDGVAFISLATLDDPDLVIPTIARTFGLAERGSLVYEEALVQFLRERQYLIVLDNMEQVI HCCEEEEEEEECCCCCCHHHHHHHHHCCHHCCCHHHHHHHHHHHHCCCEEEEECCHHHHH EAAPHVIGLLSQTEHVRVLVTSQQAANDPQEEVIPIPPLAIPLGGGSVQIETISMSPAVA HHHHHHHHHHCCCCEEEEEEECCHHCCCCHHCEECCCCEEEEECCCEEEEEEEECCHHHH LFLDRIRRVRPEFMLDPNNALHIVEICRRLRGLPLAIELVAAHSDKLRPADLLLLLRNYL HHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHC PAEQNVGAAPAPEQVLHPVLDWCISYSIPAIRWLLPRLGVFQGEWTLNQVQLLANEAPNT CCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCH IDIAKTLEAMVAKGLLLSNAASEEPTYSMLDTIRQYAARQLKRNAQLDHACHELHAKAFQ HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH QLAIDIDTGIRQGQGMVWSKCLNQAMPNVRSALQWLYQQQRYSEIARLISSMVLPLFQQG HHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YIREGLSWIARIGAHAASFEPEIQLHFGYANGLLSYAISDYPSALQAYGAALTHAKTLGD HHHHHHHHHHHHHCHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LDYQARLLNNQGMIYAEQTNYEAARQAYEAALTIRQQQSNVWGEAIILNNLGSVTQFQAE CCHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHH HQAAREYFQASLAIYQQMGDQMSQAVSFQNIAGTHLNMHEYAEAEHLYRESIAIHRQNEE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC SPPLIMALYGLGLALLRQNADERRESGEVLHQAVTMAARLNVQRSLAIAFEGFAEWLATS CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NPEHAAYLVGGAASLRNACDVGYSAVSWRDITSLREQLDRNLGQAERQAAEATGEALSQA CCCCEEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH ELLLLVSQA HHHEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]