Click here to switch to the map view.

The map label for this gene is ygaU [C]

Identifier: 159896766

GI number: 159896766

Start: 268899

End: 269627

Strand: Direct

Name: ygaU [C]

Synonym: Haur_0233

Alternate gene names: 159896766

Gene position: 268899-269627 (Clockwise)

Preceding gene: 159896764

Following gene: 159896767

Centisome position: 4.24

GC content: 50.21

Gene sequence:

>729_bases
ATGGCCGACAAGGAAAAGAAGGGTTTGTTTGGTAATTTGGCTGATCAAATGAAGGATGCAATTGAGCAAAGCCGCGAGAG
TGCCGAAGCCAAGCCCACTGCCCCAGCCCCTGGTAACGTGATTGGCCAAATGATGGAGCGCTTGCACGATATTCAAGAGA
AACAGGAAGAAGCAGCCTCATCATCAGTCTCCAATGCAGTAAATGTGATCAAAGATGCTCAAGAAGCAGCCAAAGAAGCT
CGTGAAAAGGCCGAAGCTCAGTCGGCTGCAACCAACAATGCGGTTGCAGATGCGTTGCGTCAAGCTCAAGAAGCTGCCAA
AGCCCAAGAAGTCGCTAAAGCCGAGGCTGCCAAAGCCGAAGCAGCTAAGGCTGAAGCTGCCGCTGAACAACGCTACACGG
TTCAAGGTGGTGATACCTTGGGCAAAATTTCAGCCCGCTTCTATGGCGATGCAGCTCAATGGCGACGAATTTATGAAGCC
AATCGGGCAATTATTGGCAATAATCCCGATGTGATTAGCGTTGGCCAAGAATTTGTGATTCCCGATGCAAGCACCCCACT
ACCAGTTCAACGCACCTATACTGTGCGGTCTGGTGACACCATGCGAGCGATTGCCCAACGCTTTTATGGCGATGAAATGC
AGTGGAAACGAATTTATCAAGCCAATCGCGACCGCATTCCCAACCCTGATGTAATTCACGTCGGCCAAGAATTTATCATC
CCCGAATAG

Upstream 100 bases:

>100_bases
GCAAGAGCAAACGCAAGGATCAACCATTGCATTGTGCCCGTTGGCATCTATAATGCTTATATATGCCTGCGTGACAACCG
CTTGCTAAAGGAGTTGAACC

Downstream 100 bases:

>100_bases
CACCTAAGGTAATCAGGCTATAGGCTATAGGCTATGGGCTTTTGGTATTCCGACCAATTTCCGATAGCCCATAGCCTATG
GTTAAAGCTTGATCCACGAA

Product: peptidoglycan-binding LysM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MADKEKKGLFGNLADQMKDAIEQSRESAEAKPTAPAPGNVIGQMMERLHDIQEKQEEAASSSVSNAVNVIKDAQEAAKEA
REKAEAQSAATNNAVADALRQAQEAAKAQEVAKAEAAKAEAAKAEAAAEQRYTVQGGDTLGKISARFYGDAAQWRRIYEA
NRAIIGNNPDVISVGQEFVIPDASTPLPVQRTYTVRSGDTMRAIAQRFYGDEMQWKRIYQANRDRIPNPDVIHVGQEFII
PE

Sequences:

>Translated_242_residues
MADKEKKGLFGNLADQMKDAIEQSRESAEAKPTAPAPGNVIGQMMERLHDIQEKQEEAASSSVSNAVNVIKDAQEAAKEA
REKAEAQSAATNNAVADALRQAQEAAKAQEVAKAEAAKAEAAKAEAAAEQRYTVQGGDTLGKISARFYGDAAQWRRIYEA
NRAIIGNNPDVISVGQEFVIPDASTPLPVQRTYTVRSGDTMRAIAQRFYGDEMQWKRIYQANRDRIPNPDVIHVGQEFII
PE
>Mature_241_residues
ADKEKKGLFGNLADQMKDAIEQSRESAEAKPTAPAPGNVIGQMMERLHDIQEKQEEAASSSVSNAVNVIKDAQEAAKEAR
EKAEAQSAATNNAVADALRQAQEAAKAQEVAKAEAAKAEAAKAEAAAEQRYTVQGGDTLGKISARFYGDAAQWRRIYEAN
RAIIGNNPDVISVGQEFVIPDASTPLPVQRTYTVRSGDTMRAIAQRFYGDEMQWKRIYQANRDRIPNPDVIHVGQEFIIP
E

Specific function: Unknown

COG id: COG1388

COG function: function code M; FOG: LysM repeat

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 LysM repeats [H]

Homologues:

None

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000801
- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR008861 [H]

Pfam domain/function: PF00756 Esterase; PF01476 LysM; PF05489 Phage_tail_X [H]

EC number: NA

Molecular weight: Translated: 26415; Mature: 26283

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADKEKKGLFGNLADQMKDAIEQSRESAEAKPTAPAPGNVIGQMMERLHDIQEKQEEAAS
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
SSVSNAVNVIKDAQEAAKEAREKAEAQSAATNNAVADALRQAQEAAKAQEVAKAEAAKAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAKAEAAAEQRYTVQGGDTLGKISARFYGDAAQWRRIYEANRAIIGNNPDVISVGQEFVI
HHHHHHHHHHCEEECCCCHHHHHHHHHHCCHHHHHHHHHHCCEEECCCCCEEECCCEEEC
PDASTPLPVQRTYTVRSGDTMRAIAQRFYGDEMQWKRIYQANRDRIPNPDVIHVGQEFII
CCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEECCCHHCC
PE
CC
>Mature Secondary Structure 
ADKEKKGLFGNLADQMKDAIEQSRESAEAKPTAPAPGNVIGQMMERLHDIQEKQEEAAS
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
SSVSNAVNVIKDAQEAAKEAREKAEAQSAATNNAVADALRQAQEAAKAQEVAKAEAAKAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAKAEAAAEQRYTVQGGDTLGKISARFYGDAAQWRRIYEANRAIIGNNPDVISVGQEFVI
HHHHHHHHHHCEEECCCCHHHHHHHHHHCCHHHHHHHHHHCCEEECCCCCEEECCCEEEC
PDASTPLPVQRTYTVRSGDTMRAIAQRFYGDEMQWKRIYQANRDRIPNPDVIHVGQEFII
CCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEECCCHHCC
PE
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]