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The map label for this gene is radA [H]

Identifier: 159896717

GI number: 159896717

Start: 213199

End: 214629

Strand: Direct

Name: radA [H]

Synonym: Haur_0184

Alternate gene names: 159896717

Gene position: 213199-214629 (Clockwise)

Preceding gene: 159896711

Following gene: 159896718

Centisome position: 3.36

GC content: 51.08

Gene sequence:

>1431_bases
ATGGCCAAACAACGTACAATTTTCGTCTGCCAACAATGTGATGCGCAGTTTCCCCGTTGGATGGGTCGTTGTACCGAATG
TGGTTCGTGGGATAGCTTGGTTGAACAGGTTATCGCAAAATCAGCAGGTACGACAGGCGGTAGTACTCGTTCACCTATTG
GAGTGAGCGAACCATTACGCCTGCCCGATATTCAACTTGGCGATGTTCAACGCTTGCCAGTTCGTGGCAGCGAATTTGCT
CGCGTGCTTGGTGGCGGGATTGTGCCAGGCTCGTTGGTGCTGATTGGCGGCGATCCTGGGATTGGTAAATCGACGCTCTT
GCTCGAACAAAGTGCTGCTTTGGCGGAAACTGCTGGCGATGTGTTGTATATCTCAGCGGAAGAATCGCAGCAGCAGATTA
AGCTCCGCGCCACCCGTTTGGGCTTATCGGCGCAGCGTTTATATATTTTGGCCGAAACCAGTCTTGATACGGCGATTGCC
ACAATTGAACGCATGAAGCCAGTTTTGGTGATCGTCGATTCGATTCAGACCGTGTATAGTGAGAGTGTGACCTCGGCGGC
AGGCAGTGTTTCGCAGGTGCGCGAAGGTGCGCTACGGCTTCAGCGAGTTGCAAAACAACACAATATTTCAATTATGCTGG
TTGGCCATGTGACCAAAGAAGGCGCGATTGCTGGGCCACGGGTGCTTGAGCATATTGTTGATGTGGTGTTGTACCTTGAG
GGCGAACGGTTTCATCAATATCGCTTATTGCGCAGCGTCAAAAATCGCTTTGGCTCAACCAATGAAGTTGGGGTTTTCGA
GATGAATCAAGGTGGCATGGTCGAGGTGACCAATCCATCGCAGATTTTCTTGGCCGAGCGTAGCACCAACTCGCCTGGCT
CAGCGGTAGCAGTGATGTTAGAAGGCACGCGACCCTTGTTATTGGAAGTGCAAGCCCTGACCAGCCATACTGCCAATGCC
CAACCGCGACGAACGGCCAACGGCTTTGATCAAAATCGCTTGGCGATGATCATTGCGGTGCTCTCAAAACGGGTTGGTGT
GCCATTGTTCAATCAGGATATTTATGTTAATGTGGTAGGCGGTTTGAAAGTGACCGAGCCAGCGATCGATCTAGCGGTGG
CTACGGCAATAACTTCATCATTTCGCAACCAGCGGGTTGAACCAAATACCGTTTTAATTGGTGAAATTGGGCTTTCGGGC
GAGTTGCGTTCGGTAAGTCAGCTTGATCGACGTTTGAATGAAGCCGCCAAGCTGGGTTTTCATAATGCAATCGTGCCGCA
GATCGATGCCTTACCGCAGATCGATGCGTTTCAGGTTACTGGCATTCGTTCATTGATTGAAGCAGTGCGAGCTGCTTTAA
TTGGTGCGCCGCGACCATCACCTGGTGAGCCGCCAACGGCAAAGGCAACAACTGATACTAATGATGATTAA

Upstream 100 bases:

>100_bases
CTTGGCAATTTGCGCCAAGTATAGCACGAAGTTGGTGTATTCAACTAAGCGGCTGTGCTATAATTTAACGAGATGCGGCA
AGCAAGGAATATGGAACTTC

Downstream 100 bases:

>100_bases
GCGTGAATTGTGGATGTGCTCACGAGGAGATTTATGACGATTTCGGAAAAAAAGGCTGTGGCTGTAAACAGAAATCGCTT
ACTTAGCATTGATTTTTGGG

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 476; Mature: 475

Protein sequence:

>476_residues
MAKQRTIFVCQQCDAQFPRWMGRCTECGSWDSLVEQVIAKSAGTTGGSTRSPIGVSEPLRLPDIQLGDVQRLPVRGSEFA
RVLGGGIVPGSLVLIGGDPGIGKSTLLLEQSAALAETAGDVLYISAEESQQQIKLRATRLGLSAQRLYILAETSLDTAIA
TIERMKPVLVIVDSIQTVYSESVTSAAGSVSQVREGALRLQRVAKQHNISIMLVGHVTKEGAIAGPRVLEHIVDVVLYLE
GERFHQYRLLRSVKNRFGSTNEVGVFEMNQGGMVEVTNPSQIFLAERSTNSPGSAVAVMLEGTRPLLLEVQALTSHTANA
QPRRTANGFDQNRLAMIIAVLSKRVGVPLFNQDIYVNVVGGLKVTEPAIDLAVATAITSSFRNQRVEPNTVLIGEIGLSG
ELRSVSQLDRRLNEAAKLGFHNAIVPQIDALPQIDAFQVTGIRSLIEAVRAALIGAPRPSPGEPPTAKATTDTNDD

Sequences:

>Translated_476_residues
MAKQRTIFVCQQCDAQFPRWMGRCTECGSWDSLVEQVIAKSAGTTGGSTRSPIGVSEPLRLPDIQLGDVQRLPVRGSEFA
RVLGGGIVPGSLVLIGGDPGIGKSTLLLEQSAALAETAGDVLYISAEESQQQIKLRATRLGLSAQRLYILAETSLDTAIA
TIERMKPVLVIVDSIQTVYSESVTSAAGSVSQVREGALRLQRVAKQHNISIMLVGHVTKEGAIAGPRVLEHIVDVVLYLE
GERFHQYRLLRSVKNRFGSTNEVGVFEMNQGGMVEVTNPSQIFLAERSTNSPGSAVAVMLEGTRPLLLEVQALTSHTANA
QPRRTANGFDQNRLAMIIAVLSKRVGVPLFNQDIYVNVVGGLKVTEPAIDLAVATAITSSFRNQRVEPNTVLIGEIGLSG
ELRSVSQLDRRLNEAAKLGFHNAIVPQIDALPQIDAFQVTGIRSLIEAVRAALIGAPRPSPGEPPTAKATTDTNDD
>Mature_475_residues
AKQRTIFVCQQCDAQFPRWMGRCTECGSWDSLVEQVIAKSAGTTGGSTRSPIGVSEPLRLPDIQLGDVQRLPVRGSEFAR
VLGGGIVPGSLVLIGGDPGIGKSTLLLEQSAALAETAGDVLYISAEESQQQIKLRATRLGLSAQRLYILAETSLDTAIAT
IERMKPVLVIVDSIQTVYSESVTSAAGSVSQVREGALRLQRVAKQHNISIMLVGHVTKEGAIAGPRVLEHIVDVVLYLEG
ERFHQYRLLRSVKNRFGSTNEVGVFEMNQGGMVEVTNPSQIFLAERSTNSPGSAVAVMLEGTRPLLLEVQALTSHTANAQ
PRRTANGFDQNRLAMIIAVLSKRVGVPLFNQDIYVNVVGGLKVTEPAIDLAVATAITSSFRNQRVEPNTVLIGEIGLSGE
LRSVSQLDRRLNEAAKLGFHNAIVPQIDALPQIDAFQVTGIRSLIEAVRAALIGAPRPSPGEPPTAKATTDTNDD

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=460, Percent_Identity=45.4347826086956, Blast_Score=401, Evalue=1e-113,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 51051; Mature: 50920

Theoretical pI: Translated: 7.12; Mature: 7.12

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQRTIFVCQQCDAQFPRWMGRCTECGSWDSLVEQVIAKSAGTTGGSTRSPIGVSEPLR
CCCCCEEEEEHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
LPDIQLGDVQRLPVRGSEFARVLGGGIVPGSLVLIGGDPGIGKSTLLLEQSAALAETAGD
CCCCCCCCCEECCCCCHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEEEHHHHHHHCCCC
VLYISAEESQQQIKLRATRLGLSAQRLYILAETSLDTAIATIERMKPVLVIVDSIQTVYS
EEEEECCCCHHHHHHHHHHCCCCEEEEEEEEECCHHHHHHHHHHCCCEEEEEHHHHHHHH
ESVTSAAGSVSQVREGALRLQRVAKQHNISIMLVGHVTKEGAIAGPRVLEHIVDVVLYLE
HHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCC
GERFHQYRLLRSVKNRFGSTNEVGVFEMNQGGMVEVTNPSQIFLAERSTNSPGSAVAVML
CCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCEEEEEECCCCCCCCEEEEEE
EGTRPLLLEVQALTSHTANAQPRRTANGFDQNRLAMIIAVLSKRVGVPLFNQDIYVNVVG
ECCCCEEEEEEHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCEEEEEEC
GLKVTEPAIDLAVATAITSSFRNQRVEPNTVLIGEIGLSGELRSVSQLDRRLNEAAKLGF
CCEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
HNAIVPQIDALPQIDAFQVTGIRSLIEAVRAALIGAPRPSPGEPPTAKATTDTNDD
CCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKQRTIFVCQQCDAQFPRWMGRCTECGSWDSLVEQVIAKSAGTTGGSTRSPIGVSEPLR
CCCCEEEEEHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
LPDIQLGDVQRLPVRGSEFARVLGGGIVPGSLVLIGGDPGIGKSTLLLEQSAALAETAGD
CCCCCCCCCEECCCCCHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEEEHHHHHHHCCCC
VLYISAEESQQQIKLRATRLGLSAQRLYILAETSLDTAIATIERMKPVLVIVDSIQTVYS
EEEEECCCCHHHHHHHHHHCCCCEEEEEEEEECCHHHHHHHHHHCCCEEEEEHHHHHHHH
ESVTSAAGSVSQVREGALRLQRVAKQHNISIMLVGHVTKEGAIAGPRVLEHIVDVVLYLE
HHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCC
GERFHQYRLLRSVKNRFGSTNEVGVFEMNQGGMVEVTNPSQIFLAERSTNSPGSAVAVML
CCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEECCCCEEEEEECCCCCCCCEEEEEE
EGTRPLLLEVQALTSHTANAQPRRTANGFDQNRLAMIIAVLSKRVGVPLFNQDIYVNVVG
ECCCCEEEEEEHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCEEEEEEC
GLKVTEPAIDLAVATAITSSFRNQRVEPNTVLIGEIGLSGELRSVSQLDRRLNEAAKLGF
CCEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
HNAIVPQIDALPQIDAFQVTGIRSLIEAVRAALIGAPRPSPGEPPTAKATTDTNDD
CCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 8016066 [H]