| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
Click here to switch to the map view.
The map label for this gene is 159896632
Identifier: 159896632
GI number: 159896632
Start: 127983
End: 129485
Strand: Reverse
Name: 159896632
Synonym: Haur_0099
Alternate gene names: NA
Gene position: 129485-127983 (Counterclockwise)
Preceding gene: 159896633
Following gene: 159896631
Centisome position: 2.04
GC content: 52.36
Gene sequence:
>1503_bases ATGTCATTTACACCAGCCGATTTCAAATATACCAGCCGCACCGGTGAGCTTGGCCGCCAACTCTACCCGCATCAATTGCG CGATGATCGCTATTTGGCAGCGATTGACTATGCGATTGGCTATTACGAGCAGATGCTTGGCCGTGCGCGGCGTGAATTTG AAGCCGCTACCTTGCTGGAGTTTTTTGGCGATCCCAAGTTGGCACGCGGCTTGGTAGCCTGTTTAAGCCAAACCTATCGC TGGCATCAACCGCAACTAGCCGAAGTGCTCGATCAACCTACCTATGCCCAATTGGTTGAACGCGGCTTACGCAATTCAGC CGATTTTCGGGCCTTGCTGTATGCCCATGCCAATCAAACTCATGGCTTCATTTTGCCAAGCGAACGCTGGCCTGCGGTAA GCCAACTAGCCGCTGAATTGGGATTAACGCCCAGCCAATTTGAGCGGGTGCTCTACCTTGATGATGAGCAAGAAGCATTG TTGGTGCGCAGCGCCGAACGCCCAGAACCAAGCGCAATCGTGGCTTTATACAATTTTCATTCGCTCGAAACTGGTTTGCG CAACTGTCGTTCGTTGCAACTACGGCTTGATGGCGATATTAATGCCTTGGCCGTTTCAGCCCATAATTTAGCCCAACGCT ATAACCTGCGCTACGAATTAAGCGAACCAGAAGATTGCATAGCGACGTTCGTAACCCTGACCTTGCATGGAGCCAAGGAT GCGCTAGGCAATTGGACGCGCACAGGCCGCCGAATTGCCCGTTGTGCCTTGCGTCTACTAGCGGCCCATCCCAATGCGGC CAGTGAAGGCCTAATTCAGGTGCATATGCAGGGCAAAAATAGCCTAATCAAGCTGGCAAAACGCGAGTTGACGGTGCTTG GTGGCACTGCTCGTCAGCAACCAGACAACCTTGGCGATAGCTGGGAAACCACGCTTGAACAGCAATTTAGTCAAGCCTGG AGCCGCTTGGTTAGCAAAAGCCAAAATGCAGGCTGGCGCATTCGACGTGATCCTGTGCCATTTAGTTTGGCTCATCGGTT ACTTGTCCCCGATTTCATTGCCCAACGCGGCAGCGAACGTATTCCGATCTTTGTGCCTGCGACCGAAGCGATGGCAGCGA GTTTGGCGCAGCGCTTGGTTGGTCAACCGAAGGTCTTGGTCGTAATTGCCAAAAGCTATCAAAACCTCTTGCGCAATTGC CAGGTTGCCAAAGTTATGTATCAAACCACGCCCGATATGCTGACGGTGCTTGCGCAACTCGAACAACTTACCCCAGCCCA AGCACCATTAGATCGCTGGAGTCGCCTAGCGTTGCGCTTCGATCAAGCTGGATTTGTGGCCGAAACCGAGCTTTTAGAAA TTTTGGAATGCCGTAATCCTGTTGAAATTAGCTTAGCGCTGCGTGGTTGGCGCGAAGGCACAGCCCAGTATGTGCCAAAT CTTGGCCTATTTACGCCGCAAAAACTGCGTGAATTAGGTAGTATGCTTGGCAAAGCCGCCTAG
Upstream 100 bases:
>100_bases ACATCCTTCGTGTTCTTCGTGTTCTTCGCGGTTTCAACCCTTCGTGCTCTTCGTGTCCTTCGTGGATCAACCGCCGAATC TTTAGAGTATCGGAATCATT
Downstream 100 bases:
>100_bases GAATTCCTCTCACCCCCAACCCTTCACCTCGCTCGGCGGTAGAGCTTTCAAGGGTAGGTTTCTGTTGCGAACCACAGATA GGCTGGTTCATCGCTGGATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 500; Mature: 499
Protein sequence:
>500_residues MSFTPADFKYTSRTGELGRQLYPHQLRDDRYLAAIDYAIGYYEQMLGRARREFEAATLLEFFGDPKLARGLVACLSQTYR WHQPQLAEVLDQPTYAQLVERGLRNSADFRALLYAHANQTHGFILPSERWPAVSQLAAELGLTPSQFERVLYLDDEQEAL LVRSAERPEPSAIVALYNFHSLETGLRNCRSLQLRLDGDINALAVSAHNLAQRYNLRYELSEPEDCIATFVTLTLHGAKD ALGNWTRTGRRIARCALRLLAAHPNAASEGLIQVHMQGKNSLIKLAKRELTVLGGTARQQPDNLGDSWETTLEQQFSQAW SRLVSKSQNAGWRIRRDPVPFSLAHRLLVPDFIAQRGSERIPIFVPATEAMAASLAQRLVGQPKVLVVIAKSYQNLLRNC QVAKVMYQTTPDMLTVLAQLEQLTPAQAPLDRWSRLALRFDQAGFVAETELLEILECRNPVEISLALRGWREGTAQYVPN LGLFTPQKLRELGSMLGKAA
Sequences:
>Translated_500_residues MSFTPADFKYTSRTGELGRQLYPHQLRDDRYLAAIDYAIGYYEQMLGRARREFEAATLLEFFGDPKLARGLVACLSQTYR WHQPQLAEVLDQPTYAQLVERGLRNSADFRALLYAHANQTHGFILPSERWPAVSQLAAELGLTPSQFERVLYLDDEQEAL LVRSAERPEPSAIVALYNFHSLETGLRNCRSLQLRLDGDINALAVSAHNLAQRYNLRYELSEPEDCIATFVTLTLHGAKD ALGNWTRTGRRIARCALRLLAAHPNAASEGLIQVHMQGKNSLIKLAKRELTVLGGTARQQPDNLGDSWETTLEQQFSQAW SRLVSKSQNAGWRIRRDPVPFSLAHRLLVPDFIAQRGSERIPIFVPATEAMAASLAQRLVGQPKVLVVIAKSYQNLLRNC QVAKVMYQTTPDMLTVLAQLEQLTPAQAPLDRWSRLALRFDQAGFVAETELLEILECRNPVEISLALRGWREGTAQYVPN LGLFTPQKLRELGSMLGKAA >Mature_499_residues SFTPADFKYTSRTGELGRQLYPHQLRDDRYLAAIDYAIGYYEQMLGRARREFEAATLLEFFGDPKLARGLVACLSQTYRW HQPQLAEVLDQPTYAQLVERGLRNSADFRALLYAHANQTHGFILPSERWPAVSQLAAELGLTPSQFERVLYLDDEQEALL VRSAERPEPSAIVALYNFHSLETGLRNCRSLQLRLDGDINALAVSAHNLAQRYNLRYELSEPEDCIATFVTLTLHGAKDA LGNWTRTGRRIARCALRLLAAHPNAASEGLIQVHMQGKNSLIKLAKRELTVLGGTARQQPDNLGDSWETTLEQQFSQAWS RLVSKSQNAGWRIRRDPVPFSLAHRLLVPDFIAQRGSERIPIFVPATEAMAASLAQRLVGQPKVLVVIAKSYQNLLRNCQ VAKVMYQTTPDMLTVLAQLEQLTPAQAPLDRWSRLALRFDQAGFVAETELLEILECRNPVEISLALRGWREGTAQYVPNL GLFTPQKLRELGSMLGKAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56233; Mature: 56102
Theoretical pI: Translated: 8.54; Mature: 8.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFTPADFKYTSRTGELGRQLYPHQLRDDRYLAAIDYAIGYYEQMLGRARREFEAATLLE CCCCCCCCEECCCHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FFGDPKLARGLVACLSQTYRWHQPQLAEVLDQPTYAQLVERGLRNSADFRALLYAHANQT HHCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHCCCCCCHHHHHEEECCCC HGFILPSERWPAVSQLAAELGLTPSQFERVLYLDDEQEALLVRSAERPEPSAIVALYNFH CCEEECCCCCCHHHHHHHHHCCCHHHCCEEEEECCCCHHHHEECCCCCCCCEEEEEEHHH SLETGLRNCRSLQLRLDGDINALAVSAHNLAQRYNLRYELSEPEDCIATFVTLTLHGAKD HHHHHHHHHHEEEEEECCCCCEEEEHHHHHHHHHCCEEECCCCHHHHHHHHHHHCCCCHH ALGNWTRTGRRIARCALRLLAAHPNAASEGLIQVHMQGKNSLIKLAKRELTVLGGTARQQ HHCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHEECCCCCCC PDNLGDSWETTLEQQFSQAWSRLVSKSQNAGWRIRRDPVPFSLAHRLLVPDFIAQRGSER CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCC IPIFVPATEAMAASLAQRLVGQPKVLVVIAKSYQNLLRNCQVAKVMYQTTPDMLTVLAQL CEEEECCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHH EQLTPAQAPLDRWSRLALRFDQAGFVAETELLEILECRNPVEISLALRGWREGTAQYVPN HHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHCCC LGLFTPQKLRELGSMLGKAA CCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure SFTPADFKYTSRTGELGRQLYPHQLRDDRYLAAIDYAIGYYEQMLGRARREFEAATLLE CCCCCCCEECCCHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FFGDPKLARGLVACLSQTYRWHQPQLAEVLDQPTYAQLVERGLRNSADFRALLYAHANQT HHCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHCCCCCCHHHHHEEECCCC HGFILPSERWPAVSQLAAELGLTPSQFERVLYLDDEQEALLVRSAERPEPSAIVALYNFH CCEEECCCCCCHHHHHHHHHCCCHHHCCEEEEECCCCHHHHEECCCCCCCCEEEEEEHHH SLETGLRNCRSLQLRLDGDINALAVSAHNLAQRYNLRYELSEPEDCIATFVTLTLHGAKD HHHHHHHHHHEEEEEECCCCCEEEEHHHHHHHHHCCEEECCCCHHHHHHHHHHHCCCCHH ALGNWTRTGRRIARCALRLLAAHPNAASEGLIQVHMQGKNSLIKLAKRELTVLGGTARQQ HHCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHEECCCCCCC PDNLGDSWETTLEQQFSQAWSRLVSKSQNAGWRIRRDPVPFSLAHRLLVPDFIAQRGSER CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCC IPIFVPATEAMAASLAQRLVGQPKVLVVIAKSYQNLLRNCQVAKVMYQTTPDMLTVLAQL CEEEECCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHH EQLTPAQAPLDRWSRLALRFDQAGFVAETELLEILECRNPVEISLALRGWREGTAQYVPN HHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHCCC LGLFTPQKLRELGSMLGKAA CCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA