| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is pulA [H]
Identifier: 159896629
GI number: 159896629
Start: 122510
End: 125185
Strand: Direct
Name: pulA [H]
Synonym: Haur_0096
Alternate gene names: 159896629
Gene position: 122510-125185 (Clockwise)
Preceding gene: 159896628
Following gene: 159896637
Centisome position: 1.93
GC content: 52.02
Gene sequence:
>2676_bases ATGCTTGATCAATCTGTTGTTGAAGAGCAGCCCAGCGTCGGGCAGCTTGACCGGCTGCGGGCGTATTGGGTGCGTCGCGA TACGATTGTTTGGAATATTCATGCGCTCCCCAATGCTCGCTATGAGTTGCATTATTCGCTTGATGGTTCGTTGGAGCTAA CGCCGCAGGGAATTCAGCATGGCACGGTTTTGCCGCTCGAACGTGATCCCTTGGGCTTAGATTCGACGTTGGCAGCGGCT TTTCCGCATTTGCAGGGCTTGCCAGTCTTGCGCCTCGCCCCTGAACACCACGACTTGGTTGCCACAATCTTGCGTGGCCA AGTGGCGGTGCAGGCCTATCACGCTGATGATCAGAGTTTGATCGATGCGACGGCGTTGCAAATTCCTGGGGTGCTTGATG ATTTGTATCATTACACTGGCGAGCTTGGGGTGAGTTTCGATGAGCAGAAACGCCCGATTTTGCGCTTGTGGGCACCAACC GCTCGCTCAGTTAGTCTGTTGCTCTACGCTGATTCGGCTAAGGGAACTCGCGCGATTCGCAGTGGGATGATGTTTGACCC TCAGACTGGAGTTTGGAGCATCGTTGGCAAGCCCAGTTGGAAGAACCAGTTTTATCGATTTTTGGTCGATGTGTTTGTGC CGAGCACTGGCCAATTTGAGCAAAATAGCGTCACTGATCCCTATTCGCTGAGTTTATCGACCAATAGCCAACATTCGCAA ATTGTTGATCTGCAAAGCCAACGCCTTAAACCCAAAGGTTGGAGCAAACTCGCCAAGCCCAGCCTAACCCAGCCCACCGA TATTGTGCTCTACGAACTGCATGTGCGTGATTTTTCGATCACCGATTCGAGTGTGTCAGCTGAGTTACGTGGCACCTATA AAGCCTTTAGCCAAGTTGAATCGAATGGCATGCAACATTTGCAGCGACTGGCTAAGGCCGGGGTGAGCCATGTGCACTTG CTGCCAGTCTTTGATATTGCCACCATTGAAGAACATCGGCCTGATCGCACGCGGATTGATTTTGACTATTTAGCCAGTTT GCCTGCTGATTCGACTGAGCAGCAAGCCTATCTTTTTCCAATTCGCGATCGTGATGGCTTCAATTGGGGCTATGACCCTC GCCATTACACCACGCCCGAAGGCTCGTATAGCACCGATCCTGATGGTTCAACGCGAATCTACGAGTTTCGCGAGATGGTT CAAGCGCTGAATCAGATTGGGCTGCGGGTGGTGATGGATGTGGTTTACAATCATACCCATTCGAGTGGTCAAGCCAGTTG CGCCGTGCTCGACCGAATTGTGCCAGGCTACTATCATCGCTTGGATGCTGATGGCAATGTTTGCAACAGCACCTGCTGCG CCAACACCGCTAGCGAACAGCATATGATGGAAAAATTAATGCTCGATTCGCTGCGCACATGGGCCGTCGATTATAAAGTT GATGGCTTTCGCTTCGATTTGATGGGCCATCATCTGAAGCGTAATATGTTGGCGATTCGCGCCATGCTCGATAGTTTGAC GTTGGCTGAGCATGGCGTTGATGGTAAAGCGATCTATGTGTATGGCGAGGGCTGGAATTTTGGCGAAGTTGCCGACGGTG CACGCGGCGAAAATGCCTCGCAATATGCCATGGCTGGTACGGGCATTGGCACCTTCAGCGATCGTCTGCGCGATGCGGCG CGGGGTGGCGGCCCCTTTGTTGGTTTTCAAGTGCAGGGCTTTGCCACAGGCTTGCTTGATCGGCCTAATGTGTACGAACA GCGGGCGTTTGTTGAGCGCCATTATCAAGTTGCGGTGCTCAGCGATGTGGTGCGGCTGAGTTTGGCGGGCAATTTGGCTG AGTATCCAATCCTCAGTTGCGAAGGCCAACAAACTTTGGGCGGCCACTTGTATATCAATGGCAAACCAGCAGCCTATGGT TTACGTCCTGATGATCATATTGCCTATGTTTCAGCCCACGATAATGAAACCTTATTTGATGGAGTGCAAGTCAAAGCCCC GCTCGAATCGCCAATCGCCGAGCGGGTGCGTATGCACAATTTGGCCTTGAGTTTAGTGGCCTTAGCCCAAGGAATTCCAT TTTTTCATGCTGGCGATGAGTTGCTGCGCTCGAAATCGCTGGATCGCAACAGCTACAACTCCAGCGATTGGTTTAATCGC ATCGATTGGACGGGCCAGCAGAATACTTGGGGTTCGGGCTTGCCGCCCTCGGCGGATAACCATGAACATTGGGCCACGGT CGGGCCGTTGTTAGCCAACCCTGCACTCAAGCCAACCCCTGAGGATATGGCATTTAGCTATGCGCATTTTCAAACGATGC TACAAATTCGGCGTAGCTCAGGCTTGTTTCGGTTGAACAGTGCTGAATTGATCAAGCAAAAAGTCTGGTTTCCCAATACT GGGCCTGATCAAGTGGTTGGTTTGGTGCTGATGGTGCTTGATGATGGTGTAGGCGAGCAGTGCGATCAGCAATTTAGCCG CATTGTGGTGGCTTTCAATGGCTCGCACCATGATTTAAGTTATAGCGATGCCAGTTTTGGTCATTACAATTTGCAACTGC ACCCCTTACTGGCAAATGGCTATGATCCAGTGCTGGCGCAGGCGAGCTTTGATCGCAACCTTGGCAGCATCAGCGTGCCG GGGTTTAGCTGTGTGGTGTGGGTCGAATATCGCTAA
Upstream 100 bases:
>100_bases ATGGTCAGTGGCAAGCACGCTGGAACGATTAAGCAAATTGCCAATTTGTTGCATATAATGTGCTATACATACGAGTTTAC CCATGTGATGGGAGATTAAG
Downstream 100 bases:
>100_bases TTAAACCAAAGGCGGCGCAACACGTTCAAGCGTTGCGCCGCCTTTTCGATTTAATCCGATTAATTGGTGGCATCAAGCTC GGTTTTGAGCGCTTCTTCGA
Product: alpha-1,6-glucosidase
Products: NA
Alternate protein names: Alpha-dextrin endo-1,6-alpha-glucosidase; Pullulan 6-glucanohydrolase [H]
Number of amino acids: Translated: 891; Mature: 891
Protein sequence:
>891_residues MLDQSVVEEQPSVGQLDRLRAYWVRRDTIVWNIHALPNARYELHYSLDGSLELTPQGIQHGTVLPLERDPLGLDSTLAAA FPHLQGLPVLRLAPEHHDLVATILRGQVAVQAYHADDQSLIDATALQIPGVLDDLYHYTGELGVSFDEQKRPILRLWAPT ARSVSLLLYADSAKGTRAIRSGMMFDPQTGVWSIVGKPSWKNQFYRFLVDVFVPSTGQFEQNSVTDPYSLSLSTNSQHSQ IVDLQSQRLKPKGWSKLAKPSLTQPTDIVLYELHVRDFSITDSSVSAELRGTYKAFSQVESNGMQHLQRLAKAGVSHVHL LPVFDIATIEEHRPDRTRIDFDYLASLPADSTEQQAYLFPIRDRDGFNWGYDPRHYTTPEGSYSTDPDGSTRIYEFREMV QALNQIGLRVVMDVVYNHTHSSGQASCAVLDRIVPGYYHRLDADGNVCNSTCCANTASEQHMMEKLMLDSLRTWAVDYKV DGFRFDLMGHHLKRNMLAIRAMLDSLTLAEHGVDGKAIYVYGEGWNFGEVADGARGENASQYAMAGTGIGTFSDRLRDAA RGGGPFVGFQVQGFATGLLDRPNVYEQRAFVERHYQVAVLSDVVRLSLAGNLAEYPILSCEGQQTLGGHLYINGKPAAYG LRPDDHIAYVSAHDNETLFDGVQVKAPLESPIAERVRMHNLALSLVALAQGIPFFHAGDELLRSKSLDRNSYNSSDWFNR IDWTGQQNTWGSGLPPSADNHEHWATVGPLLANPALKPTPEDMAFSYAHFQTMLQIRRSSGLFRLNSAELIKQKVWFPNT GPDQVVGLVLMVLDDGVGEQCDQQFSRIVVAFNGSHHDLSYSDASFGHYNLQLHPLLANGYDPVLAQASFDRNLGSISVP GFSCVVWVEYR
Sequences:
>Translated_891_residues MLDQSVVEEQPSVGQLDRLRAYWVRRDTIVWNIHALPNARYELHYSLDGSLELTPQGIQHGTVLPLERDPLGLDSTLAAA FPHLQGLPVLRLAPEHHDLVATILRGQVAVQAYHADDQSLIDATALQIPGVLDDLYHYTGELGVSFDEQKRPILRLWAPT ARSVSLLLYADSAKGTRAIRSGMMFDPQTGVWSIVGKPSWKNQFYRFLVDVFVPSTGQFEQNSVTDPYSLSLSTNSQHSQ IVDLQSQRLKPKGWSKLAKPSLTQPTDIVLYELHVRDFSITDSSVSAELRGTYKAFSQVESNGMQHLQRLAKAGVSHVHL LPVFDIATIEEHRPDRTRIDFDYLASLPADSTEQQAYLFPIRDRDGFNWGYDPRHYTTPEGSYSTDPDGSTRIYEFREMV QALNQIGLRVVMDVVYNHTHSSGQASCAVLDRIVPGYYHRLDADGNVCNSTCCANTASEQHMMEKLMLDSLRTWAVDYKV DGFRFDLMGHHLKRNMLAIRAMLDSLTLAEHGVDGKAIYVYGEGWNFGEVADGARGENASQYAMAGTGIGTFSDRLRDAA RGGGPFVGFQVQGFATGLLDRPNVYEQRAFVERHYQVAVLSDVVRLSLAGNLAEYPILSCEGQQTLGGHLYINGKPAAYG LRPDDHIAYVSAHDNETLFDGVQVKAPLESPIAERVRMHNLALSLVALAQGIPFFHAGDELLRSKSLDRNSYNSSDWFNR IDWTGQQNTWGSGLPPSADNHEHWATVGPLLANPALKPTPEDMAFSYAHFQTMLQIRRSSGLFRLNSAELIKQKVWFPNT GPDQVVGLVLMVLDDGVGEQCDQQFSRIVVAFNGSHHDLSYSDASFGHYNLQLHPLLANGYDPVLAQASFDRNLGSISVP GFSCVVWVEYR >Mature_891_residues MLDQSVVEEQPSVGQLDRLRAYWVRRDTIVWNIHALPNARYELHYSLDGSLELTPQGIQHGTVLPLERDPLGLDSTLAAA FPHLQGLPVLRLAPEHHDLVATILRGQVAVQAYHADDQSLIDATALQIPGVLDDLYHYTGELGVSFDEQKRPILRLWAPT ARSVSLLLYADSAKGTRAIRSGMMFDPQTGVWSIVGKPSWKNQFYRFLVDVFVPSTGQFEQNSVTDPYSLSLSTNSQHSQ IVDLQSQRLKPKGWSKLAKPSLTQPTDIVLYELHVRDFSITDSSVSAELRGTYKAFSQVESNGMQHLQRLAKAGVSHVHL LPVFDIATIEEHRPDRTRIDFDYLASLPADSTEQQAYLFPIRDRDGFNWGYDPRHYTTPEGSYSTDPDGSTRIYEFREMV QALNQIGLRVVMDVVYNHTHSSGQASCAVLDRIVPGYYHRLDADGNVCNSTCCANTASEQHMMEKLMLDSLRTWAVDYKV DGFRFDLMGHHLKRNMLAIRAMLDSLTLAEHGVDGKAIYVYGEGWNFGEVADGARGENASQYAMAGTGIGTFSDRLRDAA RGGGPFVGFQVQGFATGLLDRPNVYEQRAFVERHYQVAVLSDVVRLSLAGNLAEYPILSCEGQQTLGGHLYINGKPAAYG LRPDDHIAYVSAHDNETLFDGVQVKAPLESPIAERVRMHNLALSLVALAQGIPFFHAGDELLRSKSLDRNSYNSSDWFNR IDWTGQQNTWGSGLPPSADNHEHWATVGPLLANPALKPTPEDMAFSYAHFQTMLQIRRSSGLFRLNSAELIKQKVWFPNT GPDQVVGLVLMVLDDGVGEQCDQQFSRIVVAFNGSHHDLSYSDASFGHYNLQLHPLLANGYDPVLAQASFDRNLGSISVP GFSCVVWVEYR
Specific function: Hydrolyzes The Alpha-1,6-Glucosidic Linkages In Glycogen Which Has First Been Partially Depolymerized By Phosphorylase. Shows Only Very Little Activity With Native Glycogen. [C]
COG id: COG1523
COG function: function code G; Type II secretory pathway, pullulanase PulA and related glycosidases
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 13 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006047 - InterPro: IPR004193 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR013783 - InterPro: IPR014756 - InterPro: IPR005323 - InterPro: IPR011839 [H]
Pfam domain/function: PF00128 Alpha-amylase; PF02922 CBM_48; PF03714 PUD [H]
EC number: =3.2.1.41 [H]
Molecular weight: Translated: 99251; Mature: 99251
Theoretical pI: Translated: 5.97; Mature: 5.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDQSVVEEQPSVGQLDRLRAYWVRRDTIVWNIHALPNARYELHYSLDGSLELTPQGIQH CCCHHHHHCCCCCCHHHHHHHHHEECCEEEEEEEECCCCCEEEEEECCCCEEECCCCCCC GTVLPLERDPLGLDSTLAAAFPHLQGLPVLRLAPEHHDLVATILRGQVAVQAYHADDQSL CEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCEEEEEEECCCHHH IDATALQIPGVLDDLYHYTGELGVSFDEQKRPILRLWAPTARSVSLLLYADSAKGTRAIR HHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCHHHHH SGMMFDPQTGVWSIVGKPSWKNQFYRFLVDVFVPSTGQFEQNSVTDPYSLSLSTNSQHSQ CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCHH IVDLQSQRLKPKGWSKLAKPSLTQPTDIVLYELHVRDFSITDSSVSAELRGTYKAFSQVE HHHHHHHCCCCCCHHHHCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHH SNGMQHLQRLAKAGVSHVHLLPVFDIATIEEHRPDRTRIDFDYLASLPADSTEQQAYLFP HHHHHHHHHHHHCCCCEEEEEEEEEEEEHHHCCCCCCEECHHHHHCCCCCCCCCCEEEEE IRDRDGFNWGYDPRHYTTPEGSYSTDPDGSTRIYEFREMVQALNQIGLRVVMDVVYNHTH EECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SSGQASCAVLDRIVPGYYHRLDADGNVCNSTCCANTASEQHMMEKLMLDSLRTWAVDYKV CCCCHHHHHHHHHCCCHHEEECCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHEEEEEEE DGFRFDLMGHHLKRNMLAIRAMLDSLTLAEHGVDGKAIYVYGEGWNFGEVADGARGENAS CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCC QYAMAGTGIGTFSDRLRDAARGGGPFVGFQVQGFATGLLDRPNVYEQRAFVERHYQVAVL CEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH SDVVRLSLAGNLAEYPILSCEGQQTLGGHLYINGKPAAYGLRPDDHIAYVSAHDNETLFD HHHHHHHHCCCHHHCCEEECCCCCCCCCEEEECCCCCEECCCCCCCEEEEEECCCCEECC GVQVKAPLESPIAERVRMHNLALSLVALAQGIPFFHAGDELLRSKSLDRNSYNSSDWFNR CEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHCCCCCCCCCCCHHHHC IDWTGQQNTWGSGLPPSADNHEHWATVGPLLANPALKPTPEDMAFSYAHFQTMLQIRRSS CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC GLFRLNSAELIKQKVWFPNTGPDQVVGLVLMVLDDGVGEQCDQQFSRIVVAFNGSHHDLS CEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCEEEEEECCCCCCCC YSDASFGHYNLQLHPLLANGYDPVLAQASFDRNLGSISVPGFSCVVWVEYR CCCCCCCEEEEEEEEEECCCCCCHHCCCCCCCCCCCEECCCEEEEEEEEEC >Mature Secondary Structure MLDQSVVEEQPSVGQLDRLRAYWVRRDTIVWNIHALPNARYELHYSLDGSLELTPQGIQH CCCHHHHHCCCCCCHHHHHHHHHEECCEEEEEEEECCCCCEEEEEECCCCEEECCCCCCC GTVLPLERDPLGLDSTLAAAFPHLQGLPVLRLAPEHHDLVATILRGQVAVQAYHADDQSL CEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCEEEEEEECCCHHH IDATALQIPGVLDDLYHYTGELGVSFDEQKRPILRLWAPTARSVSLLLYADSAKGTRAIR HHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCHHHHH SGMMFDPQTGVWSIVGKPSWKNQFYRFLVDVFVPSTGQFEQNSVTDPYSLSLSTNSQHSQ CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCHH IVDLQSQRLKPKGWSKLAKPSLTQPTDIVLYELHVRDFSITDSSVSAELRGTYKAFSQVE HHHHHHHCCCCCCHHHHCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHH SNGMQHLQRLAKAGVSHVHLLPVFDIATIEEHRPDRTRIDFDYLASLPADSTEQQAYLFP HHHHHHHHHHHHCCCCEEEEEEEEEEEEHHHCCCCCCEECHHHHHCCCCCCCCCCEEEEE IRDRDGFNWGYDPRHYTTPEGSYSTDPDGSTRIYEFREMVQALNQIGLRVVMDVVYNHTH EECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SSGQASCAVLDRIVPGYYHRLDADGNVCNSTCCANTASEQHMMEKLMLDSLRTWAVDYKV CCCCHHHHHHHHHCCCHHEEECCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHEEEEEEE DGFRFDLMGHHLKRNMLAIRAMLDSLTLAEHGVDGKAIYVYGEGWNFGEVADGARGENAS CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCC QYAMAGTGIGTFSDRLRDAARGGGPFVGFQVQGFATGLLDRPNVYEQRAFVERHYQVAVL CEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH SDVVRLSLAGNLAEYPILSCEGQQTLGGHLYINGKPAAYGLRPDDHIAYVSAHDNETLFD HHHHHHHHCCCHHHCCEEECCCCCCCCCEEEECCCCCEECCCCCCCEEEEEECCCCEECC GVQVKAPLESPIAERVRMHNLALSLVALAQGIPFFHAGDELLRSKSLDRNSYNSSDWFNR CEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHCCCCCCCCCCCHHHHC IDWTGQQNTWGSGLPPSADNHEHWATVGPLLANPALKPTPEDMAFSYAHFQTMLQIRRSS CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC GLFRLNSAELIKQKVWFPNTGPDQVVGLVLMVLDDGVGEQCDQQFSRIVVAFNGSHHDLS CEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCEEEEEECCCCCCCC YSDASFGHYNLQLHPLLANGYDPVLAQASFDRNLGSISVPGFSCVVWVEYR CCCCCCCEEEEEEEEEECCCCCCHHCCCCCCCCCCCEECCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2181242; 3902792; 2661532 [H]