| Definition | Caldivirga maquilingensis IC-167 chromosome, complete genome. |
|---|---|
| Accession | NC_009954 |
| Length | 2,077,567 |
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The map label for this gene is 159041879
Identifier: 159041879
GI number: 159041879
Start: 1388878
End: 1391244
Strand: Reverse
Name: 159041879
Synonym: Cmaq_1315
Alternate gene names: NA
Gene position: 1391244-1388878 (Counterclockwise)
Preceding gene: 159041880
Following gene: 159041877
Centisome position: 66.97
GC content: 43.05
Gene sequence:
>2367_bases ATGAGTAGGTCAATAATTCCTTACGTACTAGTCTCAATAGCAGTAGCCGCCTTAATCACAGTAATCCTTGGGGGTCACAT AGCCTATGCGGCTTCAAATACAGTGACAATAATTGAGGCTATTCCAGGTACAACCATTTACACTCCTGGTCAACCTATCT GGAATCCATACGCACCCAACAACTTCATAGGTACTGTGGGAACATACATGCCACTTGCATTATACAATCCAATTACAGCT AAATTCTATCCTGTTTTGGCTGAGAATTGGACTGCTCAAGTTCTTCCTAATGGATCAGGTATATTCACAATCTACCTTAG GCCTGGCTTATACTGGTTTAATGGTTCAGCCACAATACCCTTCACCGCATGGGATGTTTATGCGGAGTTCTATATTGGTG TTAAGGCATTCAGCTGGTATTATCCATTCATGCAACCACAATACGCCGATGAAGACATTAGAGTATTGAATAATTACACG ATACAATTCCTATTCCAAACCTGGAGCCCGCAGCAAATATACTATATATTAACAACTACGATTGATACACCATACGCAGT ATGGAAGCCTATTGTTGAGAAGCTTCAAACAATGAATGTTACTCAAGCATCAGCATACGGTAATAATGTTACTAAGTTTG CTGCACCATACTGGGGCTTAAGTCCATATTATGTTGAATTATCAACATTGAGCGCAACCTACCAGACACTGTTACTTGAA CCAATGTACTTTAATGGTGTTCCATTACTAGCATCATGGGTTAAAATATTCCCATTCAATGATTGGAGCATCTACCCGAA GTACGTTAGATGGTGGGTTGGTGGTAATACTCAAGCAATGACTGCCTTCCTGGCTCGTAAGGCTAATTTAGGGTTCATTG GATTATCACTACAGCAGGAGGCTACGCTCAATGCCAGTGGCTTTGGTGAATATAATGGGCCGAATTATGCGACGAACGGT TTCACGCTTAATCCAAACATTTACCCATTCAATATTCCTCAGGTTAGGCAAGCATTCTGCTACATTATTAATAGAACGGC TGAATCATTGGCCTGGGGTGGATTATATGCACCTGACCCATACCCAGTCCCTGTAGCCAACTTCCAGCCATCAATACAAT CATACCCATCAAGCGTGTGGAGTATTGTAACTGTGCATTGTACAACAAATTGGACTAAGGCTGCTCAATTACTGGAATCA GCCGGTTTAACCTATAAGAATGGTCAATGGTATCTGCCTAATGGGACCCCATTTAAGTTAACTTTAATAGTGCCATCAGG TTTCACTGACTGGGCTACATTCTCATCAGCTGCCGCTGTCTCAATAAGCCAGTTCGGTATACCTACAACATTATTAGCCT TGGATACTTCAACATACTGGAGTACAATATTCCCTAATGGTGAGTATGAAATGGCTATAACATGGATGACGTGGTCAAGG GGTTACGGTGACTTCGGTTTCCTAGCATCGCCATGGTGGACTTTCCCAGCATTCAATCTCTCCAAGGCTTGGCCATTCCA GTGGCCTAATGGAACATGCACACCAGTAACAGCACCTAGCATACCAGGCTTTACTCCACCTAATAGTACGATAGTATGGT GTGTTAATTCAACATTCGGCTACATTAACTTAACCAACTGGGGCGTAGCATTTGCGGCCACTGCACCAGGGATGTCTCAG TATGATGAGCTTCTGAAGGTATTATTCGCATGGTATGAATACTACATGCCAGTGATACCAAGCTTAACCCAGAACCAGCA ATTCAACTATAATCCAGCTGACTTTGATATTGAATGGTGGGTTAAAGGCTTAACATTATTCTCATGGATACCCTTTGTAC AGGGACCATGGGGTGAAACACTACCCATAATGCTTTGGAATGCTGGATTCGGTGCAATAGCACCACCAGGTGTAGTACCA CCGTTAGCGCAGGCTGCCGTCAATGGCTCACTATGGAGAATTGACCCGCAGTTAGCTGCATTCTTAGGATGGAGCCCAAG CACAGTGAACCTAGAAGCCATAGCCTCATACTTCCATATACCGTATACTCCAGTATCAACCACTACTTCAACCACGACTA CTACTACTTCAACCACCACAACTACTACTACGCCGGTGACTACTACTTCAACGACTACTGCCACAACCACTACTACTGCT ACAACAACCACTACGGCTGTTAGCACTGTTACAAGCACAGTAACAACCACTGCCGTAAGCACTGTAACATCAACAGCAAC CACTACGGCAGTATCAACCGTAACCGTGACTAAACCAGTAATATCAACAGCACTAATAGCAGGAATAGTAATCATAGTAA TCGTAATAGCAGCAATAGCAGCAATAATAGCATTAAGAAGAAGATGA
Upstream 100 bases:
>100_bases TAATTTATTTATTAATTACATTCTAATGTGAAGAACCATATTACTCAATAGTTTCAGATATTGGAATAAAACTTAAATAC TTTATATTTTTACCCACTTG
Downstream 100 bases:
>100_bases GGATGAATCAATGATTAATTAAATTAAAACTATCTTCTTTTCCCTTCATCCTTCATTCTCTTTAAATTCATCACACATTA ATGATTATTCAATACATACT
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 788; Mature: 787
Protein sequence:
>788_residues MSRSIIPYVLVSIAVAALITVILGGHIAYAASNTVTIIEAIPGTTIYTPGQPIWNPYAPNNFIGTVGTYMPLALYNPITA KFYPVLAENWTAQVLPNGSGIFTIYLRPGLYWFNGSATIPFTAWDVYAEFYIGVKAFSWYYPFMQPQYADEDIRVLNNYT IQFLFQTWSPQQIYYILTTTIDTPYAVWKPIVEKLQTMNVTQASAYGNNVTKFAAPYWGLSPYYVELSTLSATYQTLLLE PMYFNGVPLLASWVKIFPFNDWSIYPKYVRWWVGGNTQAMTAFLARKANLGFIGLSLQQEATLNASGFGEYNGPNYATNG FTLNPNIYPFNIPQVRQAFCYIINRTAESLAWGGLYAPDPYPVPVANFQPSIQSYPSSVWSIVTVHCTTNWTKAAQLLES AGLTYKNGQWYLPNGTPFKLTLIVPSGFTDWATFSSAAAVSISQFGIPTTLLALDTSTYWSTIFPNGEYEMAITWMTWSR GYGDFGFLASPWWTFPAFNLSKAWPFQWPNGTCTPVTAPSIPGFTPPNSTIVWCVNSTFGYINLTNWGVAFAATAPGMSQ YDELLKVLFAWYEYYMPVIPSLTQNQQFNYNPADFDIEWWVKGLTLFSWIPFVQGPWGETLPIMLWNAGFGAIAPPGVVP PLAQAAVNGSLWRIDPQLAAFLGWSPSTVNLEAIASYFHIPYTPVSTTTSTTTTTTSTTTTTTTPVTTTSTTTATTTTTA TTTTTAVSTVTSTVTTTAVSTVTSTATTTAVSTVTVTKPVISTALIAGIVIIVIVIAAIAAIIALRRR
Sequences:
>Translated_788_residues MSRSIIPYVLVSIAVAALITVILGGHIAYAASNTVTIIEAIPGTTIYTPGQPIWNPYAPNNFIGTVGTYMPLALYNPITA KFYPVLAENWTAQVLPNGSGIFTIYLRPGLYWFNGSATIPFTAWDVYAEFYIGVKAFSWYYPFMQPQYADEDIRVLNNYT IQFLFQTWSPQQIYYILTTTIDTPYAVWKPIVEKLQTMNVTQASAYGNNVTKFAAPYWGLSPYYVELSTLSATYQTLLLE PMYFNGVPLLASWVKIFPFNDWSIYPKYVRWWVGGNTQAMTAFLARKANLGFIGLSLQQEATLNASGFGEYNGPNYATNG FTLNPNIYPFNIPQVRQAFCYIINRTAESLAWGGLYAPDPYPVPVANFQPSIQSYPSSVWSIVTVHCTTNWTKAAQLLES AGLTYKNGQWYLPNGTPFKLTLIVPSGFTDWATFSSAAAVSISQFGIPTTLLALDTSTYWSTIFPNGEYEMAITWMTWSR GYGDFGFLASPWWTFPAFNLSKAWPFQWPNGTCTPVTAPSIPGFTPPNSTIVWCVNSTFGYINLTNWGVAFAATAPGMSQ YDELLKVLFAWYEYYMPVIPSLTQNQQFNYNPADFDIEWWVKGLTLFSWIPFVQGPWGETLPIMLWNAGFGAIAPPGVVP PLAQAAVNGSLWRIDPQLAAFLGWSPSTVNLEAIASYFHIPYTPVSTTTSTTTTTTSTTTTTTTPVTTTSTTTATTTTTA TTTTTAVSTVTSTVTTTAVSTVTSTATTTAVSTVTVTKPVISTALIAGIVIIVIVIAAIAAIIALRRR >Mature_787_residues SRSIIPYVLVSIAVAALITVILGGHIAYAASNTVTIIEAIPGTTIYTPGQPIWNPYAPNNFIGTVGTYMPLALYNPITAK FYPVLAENWTAQVLPNGSGIFTIYLRPGLYWFNGSATIPFTAWDVYAEFYIGVKAFSWYYPFMQPQYADEDIRVLNNYTI QFLFQTWSPQQIYYILTTTIDTPYAVWKPIVEKLQTMNVTQASAYGNNVTKFAAPYWGLSPYYVELSTLSATYQTLLLEP MYFNGVPLLASWVKIFPFNDWSIYPKYVRWWVGGNTQAMTAFLARKANLGFIGLSLQQEATLNASGFGEYNGPNYATNGF TLNPNIYPFNIPQVRQAFCYIINRTAESLAWGGLYAPDPYPVPVANFQPSIQSYPSSVWSIVTVHCTTNWTKAAQLLESA GLTYKNGQWYLPNGTPFKLTLIVPSGFTDWATFSSAAAVSISQFGIPTTLLALDTSTYWSTIFPNGEYEMAITWMTWSRG YGDFGFLASPWWTFPAFNLSKAWPFQWPNGTCTPVTAPSIPGFTPPNSTIVWCVNSTFGYINLTNWGVAFAATAPGMSQY DELLKVLFAWYEYYMPVIPSLTQNQQFNYNPADFDIEWWVKGLTLFSWIPFVQGPWGETLPIMLWNAGFGAIAPPGVVPP LAQAAVNGSLWRIDPQLAAFLGWSPSTVNLEAIASYFHIPYTPVSTTTSTTTTTTSTTTTTTTPVTTTSTTTATTTTTAT TTTTAVSTVTSTVTTTAVSTVTSTATTTAVSTVTVTKPVISTALIAGIVIIVIVIAAIAAIIALRRR
Specific function: Unknown
COG id: COG0747
COG function: function code E; ABC-type dipeptide transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 86759; Mature: 86628
Theoretical pI: Translated: 5.41; Mature: 5.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRSIIPYVLVSIAVAALITVILGGHIAYAASNTVTIIEAIPGTTIYTPGQPIWNPYAPN CCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCCEEECCCCCCCCCCCCC NFIGTVGTYMPLALYNPITAKFYPVLAENWTAQVLPNGSGIFTIYLRPGLYWFNGSATIP CCEECHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEECCEEEECCCEEEE FTAWDVYAEFYIGVKAFSWYYPFMQPQYADEDIRVLNNYTIQFLFQTWSPQQIYYILTTT EEHHHHHHHHHEEEEEEEEECCCCCCCCCCCHHEEECCCEEEEEEECCCCCEEEEEEEEE IDTPYAVWKPIVEKLQTMNVTQASAYGNNVTKFAAPYWGLSPYYVELSTLSATYQTLLLE CCCCHHHHHHHHHHHHHCCCEEHHHCCCCCCEEECCCCCCCCEEEEEEHHHHHHHHHHCC PMYFNGVPLLASWVKIFPFNDWSIYPKYVRWWVGGNTQAMTAFLARKANLGFIGLSLQQE CHHCCCHHHHHHHEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEECCC ATLNASGFGEYNGPNYATNGFTLNPNIYPFNIPQVRQAFCYIINRTAESLAWGGLYAPDP CCCCCCCCCCCCCCCEECCCEEECCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC YPVPVANFQPSIQSYPSSVWSIVTVHCTTNWTKAAQLLESAGLTYKNGQWYLPNGTPFKL CCCCCCCCCCCHHHCCCCEEEEEEEEEECCHHHHHHHHHHCCCEEECCEEECCCCCCEEE TLIVPSGFTDWATFSSAAAVSISQFGIPTTLLALDTSTYWSTIFPNGEYEMAITWMTWSR EEEECCCCCCHHHHCCHHEEEHHHCCCCEEEEEEECCCCEEEECCCCCEEEEEEEEEECC GYGDFGFLASPWWTFPAFNLSKAWPFQWPNGTCTPVTAPSIPGFTPPNSTIVWCVNSTFG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCE YINLTNWGVAFAATAPGMSQYDELLKVLFAWYEYYMPVIPSLTQNQQFNYNPADFDIEWW EEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH VKGLTLFSWIPFVQGPWGETLPIMLWNAGFGAIAPPGVVPPLAQAAVNGSLWRIDPQLAA HHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHCCCCEEEECHHHHH FLGWSPSTVNLEAIASYFHIPYTPVSTTTSTTTTTTSTTTTTTTPVTTTSTTTATTTTTA HHCCCCCEEEHHHHHHHHCCCCCCCCCCCCCEEEEECCEEEEECCEEECCCCEEEEEEEC TTTTTAVSTVTSTVTTTAVSTVTSTATTTAVSTVTVTKPVISTALIAGIVIIVIVIAAIA CEEHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH AIIALRRR HHHHHCCC >Mature Secondary Structure SRSIIPYVLVSIAVAALITVILGGHIAYAASNTVTIIEAIPGTTIYTPGQPIWNPYAPN CCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCCEEECCCCCCCCCCCCC NFIGTVGTYMPLALYNPITAKFYPVLAENWTAQVLPNGSGIFTIYLRPGLYWFNGSATIP CCEECHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEECCEEEECCCEEEE FTAWDVYAEFYIGVKAFSWYYPFMQPQYADEDIRVLNNYTIQFLFQTWSPQQIYYILTTT EEHHHHHHHHHEEEEEEEEECCCCCCCCCCCHHEEECCCEEEEEEECCCCCEEEEEEEEE IDTPYAVWKPIVEKLQTMNVTQASAYGNNVTKFAAPYWGLSPYYVELSTLSATYQTLLLE CCCCHHHHHHHHHHHHHCCCEEHHHCCCCCCEEECCCCCCCCEEEEEEHHHHHHHHHHCC PMYFNGVPLLASWVKIFPFNDWSIYPKYVRWWVGGNTQAMTAFLARKANLGFIGLSLQQE CHHCCCHHHHHHHEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEECCC ATLNASGFGEYNGPNYATNGFTLNPNIYPFNIPQVRQAFCYIINRTAESLAWGGLYAPDP CCCCCCCCCCCCCCCEECCCEEECCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC YPVPVANFQPSIQSYPSSVWSIVTVHCTTNWTKAAQLLESAGLTYKNGQWYLPNGTPFKL CCCCCCCCCCCHHHCCCCEEEEEEEEEECCHHHHHHHHHHCCCEEECCEEECCCCCCEEE TLIVPSGFTDWATFSSAAAVSISQFGIPTTLLALDTSTYWSTIFPNGEYEMAITWMTWSR EEEECCCCCCHHHHCCHHEEEHHHCCCCEEEEEEECCCCEEEECCCCCEEEEEEEEEECC GYGDFGFLASPWWTFPAFNLSKAWPFQWPNGTCTPVTAPSIPGFTPPNSTIVWCVNSTFG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCE YINLTNWGVAFAATAPGMSQYDELLKVLFAWYEYYMPVIPSLTQNQQFNYNPADFDIEWW EEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH VKGLTLFSWIPFVQGPWGETLPIMLWNAGFGAIAPPGVVPPLAQAAVNGSLWRIDPQLAA HHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHCCCCEEEECHHHHH FLGWSPSTVNLEAIASYFHIPYTPVSTTTSTTTTTTSTTTTTTTPVTTTSTTTATTTTTA HHCCCCCEEEHHHHHHHHCCCCCCCCCCCCCEEEEECCEEEEECCEEECCCCEEEEEEEC TTTTTAVSTVTSTVTTTAVSTVTSTATTTAVSTVTVTKPVISTALIAGIVIIVIVIAAIA CEEHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH AIIALRRR HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA