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The map label for this gene is yidA [C]

Identifier: 159041788

GI number: 159041788

Start: 1293978

End: 1294700

Strand: Reverse

Name: yidA [C]

Synonym: Cmaq_1223

Alternate gene names: 159041788

Gene position: 1294700-1293978 (Counterclockwise)

Preceding gene: 159041794

Following gene: 159041782

Centisome position: 62.32

GC content: 42.74

Gene sequence:

>723_bases
ATGGGTATGGGTATTAATCTACTCCTACTCGACGTTGATGGAACATTAACAGTGAATAGGGGTGAACTGGCGCTTGAACC
TGAGGCAATTAGAGCTATACAGAGGGCTAGGGGTAGGGTTAGGATTGGTTTAGTAACCGGTAATGCATTGATTGTTGCTG
AGGCTTTAGCAAAGTACATTGGGCTTAATGATGCACCAATTATCGCTGAGAACGGTTGCATAATCAAGGTTAATTCATCA
ACGATAATGCTAAGTGCGTTAAGTGCTAGGAGCATTGCTGAGGAATTAATTAAGAGGCTTGGATTGAAGCCCACTTACCA
ATACCCCTGCAGGTACCTTGACATGACCCTTGACGTTAATGGTGATGATTATAATGTTGTAAATAGGATTAGGGAGGAGT
TAATTAAAATGAGGGTTAATGAATCATATGCCGTGGAAACCAGTGGCTACGCAGTTCACATTAGGCCTATTGAATGCAGT
AAAGCCACTGCAATTAGGAGGCTTTGCGAGTTAATTAATGTGGATTGCTCAACAGTAGCCTTCATAGGTGATAGTGATAT
TGATGCCGAGGCCTTTAAGGTTGTTGGCTTAGGCGTGGCGGTGGGTAATGCCACAGGGAGGGCTAAGGAACACGCTAAGT
TAGTGACAAGAAACCCAAGCGGTAAGGGTGTTGCAGAGTTCATAGAATTAATGTTAAGTGGAGGTATTAATACATTGACT
TAA

Upstream 100 bases:

>100_bases
AACTAGGTAATTTGCTGGATTATTGAAAAATACTCAATAACCTCAAGCAACTTAATCCTGTGGTTTAAGTAAAGGCTTAT
TAACCCTTCAATGAGGCCTC

Downstream 100 bases:

>100_bases
CCTACTCCTCAAATTCCTCCCCCATCTCCTCCTCACCCGTCTTTAAAGTGTTTATTACATCATTTATTATTTGCGCATTT
ATTTCATTTGATATGAATGG

Product: SPP-like hydrolase

Products: NA

Alternate protein names: PGP; PGPase [H]

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MGMGINLLLLDVDGTLTVNRGELALEPEAIRAIQRARGRVRIGLVTGNALIVAEALAKYIGLNDAPIIAENGCIIKVNSS
TIMLSALSARSIAEELIKRLGLKPTYQYPCRYLDMTLDVNGDDYNVVNRIREELIKMRVNESYAVETSGYAVHIRPIECS
KATAIRRLCELINVDCSTVAFIGDSDIDAEAFKVVGLGVAVGNATGRAKEHAKLVTRNPSGKGVAEFIELMLSGGINTLT

Sequences:

>Translated_240_residues
MGMGINLLLLDVDGTLTVNRGELALEPEAIRAIQRARGRVRIGLVTGNALIVAEALAKYIGLNDAPIIAENGCIIKVNSS
TIMLSALSARSIAEELIKRLGLKPTYQYPCRYLDMTLDVNGDDYNVVNRIREELIKMRVNESYAVETSGYAVHIRPIECS
KATAIRRLCELINVDCSTVAFIGDSDIDAEAFKVVGLGVAVGNATGRAKEHAKLVTRNPSGKGVAEFIELMLSGGINTLT
>Mature_239_residues
GMGINLLLLDVDGTLTVNRGELALEPEAIRAIQRARGRVRIGLVTGNALIVAEALAKYIGLNDAPIIAENGCIIKVNSST
IMLSALSARSIAEELIKRLGLKPTYQYPCRYLDMTLDVNGDDYNVVNRIREELIKMRVNESYAVETSGYAVHIRPIECSK
ATAIRRLCELINVDCSTVAFIGDSDIDAEAFKVVGLGVAVGNATGRAKEHAKLVTRNPSGKGVAEFIELMLSGGINTLT

Specific function: Catalyzes the dephosphorylation of 2-phosphoglycolate [H]

COG id: COG0561

COG function: function code R; Predicted hydrolases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal SPP-like hydrolase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023214
- InterPro:   IPR013200
- InterPro:   IPR006379
- InterPro:   IPR006382 [H]

Pfam domain/function: PF08282 Hydrolase_3 [H]

EC number: =3.1.3.18 [H]

Molecular weight: Translated: 25875; Mature: 25744

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMGINLLLLDVDGTLTVNRGELALEPEAIRAIQRARGRVRIGLVTGNALIVAEALAKYI
CCCCEEEEEEECCCEEEEECCCEEECHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHH
GLNDAPIIAENGCIIKVNSSTIMLSALSARSIAEELIKRLGLKPTYQYPCRYLDMTLDVN
CCCCCCEEECCCEEEEECCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEC
GDDYNVVNRIREELIKMRVNESYAVETSGYAVHIRPIECSKATAIRRLCELINVDCSTVA
CCCHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEEECCCHHHHHHHHHHHHCCCCCEEE
FIGDSDIDAEAFKVVGLGVAVGNATGRAKEHAKLVTRNPSGKGVAEFIELMLSGGINTLT
EECCCCCCHHHEEEEEEEEEECCCCCCCHHHHEEEEECCCCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
GMGINLLLLDVDGTLTVNRGELALEPEAIRAIQRARGRVRIGLVTGNALIVAEALAKYI
CCCEEEEEEECCCEEEEECCCEEECHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHH
GLNDAPIIAENGCIIKVNSSTIMLSALSARSIAEELIKRLGLKPTYQYPCRYLDMTLDVN
CCCCCCEEECCCEEEEECCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEC
GDDYNVVNRIREELIKMRVNESYAVETSGYAVHIRPIECSKATAIRRLCELINVDCSTVA
CCCHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEEECCCHHHHHHHHHHHHCCCCCEEE
FIGDSDIDAEAFKVVGLGVAVGNATGRAKEHAKLVTRNPSGKGVAEFIELMLSGGINTLT
EECCCCCCHHHEEEEEEEEEECCCCCCCHHHHEEEEECCCCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA