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The map label for this gene is xynB [H]

Identifier: 159041781

GI number: 159041781

Start: 1282672

End: 1283535

Strand: Reverse

Name: xynB [H]

Synonym: Cmaq_1216

Alternate gene names: 159041781

Gene position: 1283535-1282672 (Counterclockwise)

Preceding gene: 159041782

Following gene: 159041780

Centisome position: 61.78

GC content: 45.14

Gene sequence:

>864_bases
ATGAGAATTGAGGTTATTAGGCTTAGGGATGATAGACCAGTTACATTAACATCATACATCCTTGATACATCCCCTGAAAT
ATCTTGGGGAAGGAGACCGGCAATCATTATTTGCCCTGGGGGAGGATTCGTACGCACATCTGATAGGGAAGCTGAACCCG
TGGCCTCAATATTCCTTTCAAGGGGTTACCACGCCTTCGTATTAAGGTACTCCACTGAAAGCATGGGTGTTAGCAAAGTG
TACCCTGACGTGGTTATTGAATTAGCCAACGCCGTGGTGAGCATTAGGCGTAATGCGGATAAGTGGAATATAGACCCCGG
TAGGATTGCAATAATAGGATTCTCAGCTGGAGGAACCGTGGCGGCTTTATACAGTGTTAATTGGCATAGGGATTGGTTAA
GTAAGCTGGTTAATGCCCCTAAGGATACCCTTAAACCATCAGCGGTAATACTGGCCTACCCTGTTGTGGACTTCGCGGTA
ATGAATGAGGTAACTAAGAATAATAGAAACACCCCAGCCGCGGGGGTGTTATTTAAAATGATGTCTCTAGCCTTAGGCTC
AGGTAAATTCACTGAGGATGATTTAAGGGAATTAAGCGCAACATACCATGTTGATGAGAATACTCCCCCAACATTCATAT
GGACTACTGCGGATGATGATGTAGTTCCCGTGGAGAGCATAATAAGTTACGTTAACGCATTAGCCAGAAATAAGGTGCCC
TTTGAATTCCACGTCTTTGAAAAGGGAGTTCACGGACTCTCACTGGCTGATAAAACCACTGCCTCAAATCCCCAGCATGT
TAATCCCCCTGTGGCTAAGTGGATTGAATTAGCATTAAGCTGGCTGGAGAGGCACATTGAGTAA

Upstream 100 bases:

>100_bases
TAAATCATGTTATTAATTAACCCTATAAGGTGACTTAACTTACAAATGCCTTAACCTGAATAAATACAATACTTATAAGT
GAACCGTGGTTAAGCGCACT

Downstream 100 bases:

>100_bases
TTAAGGCTACCAGTATTATGTCTAGGCGCATTAACCCTCATCCCCATTATAAAAACACTAAGTAATACTCAACTCAGATG
AGCCAATAAACCATAACTCA

Product: putative esterase

Products: NA

Alternate protein names: Xylanase B; 1,4-beta-D-xylan xylanohydrolase B [H]

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MRIEVIRLRDDRPVTLTSYILDTSPEISWGRRPAIIICPGGGFVRTSDREAEPVASIFLSRGYHAFVLRYSTESMGVSKV
YPDVVIELANAVVSIRRNADKWNIDPGRIAIIGFSAGGTVAALYSVNWHRDWLSKLVNAPKDTLKPSAVILAYPVVDFAV
MNEVTKNNRNTPAAGVLFKMMSLALGSGKFTEDDLRELSATYHVDENTPPTFIWTTADDDVVPVESIISYVNALARNKVP
FEFHVFEKGVHGLSLADKTTASNPQHVNPPVAKWIELALSWLERHIE

Sequences:

>Translated_287_residues
MRIEVIRLRDDRPVTLTSYILDTSPEISWGRRPAIIICPGGGFVRTSDREAEPVASIFLSRGYHAFVLRYSTESMGVSKV
YPDVVIELANAVVSIRRNADKWNIDPGRIAIIGFSAGGTVAALYSVNWHRDWLSKLVNAPKDTLKPSAVILAYPVVDFAV
MNEVTKNNRNTPAAGVLFKMMSLALGSGKFTEDDLRELSATYHVDENTPPTFIWTTADDDVVPVESIISYVNALARNKVP
FEFHVFEKGVHGLSLADKTTASNPQHVNPPVAKWIELALSWLERHIE
>Mature_287_residues
MRIEVIRLRDDRPVTLTSYILDTSPEISWGRRPAIIICPGGGFVRTSDREAEPVASIFLSRGYHAFVLRYSTESMGVSKV
YPDVVIELANAVVSIRRNADKWNIDPGRIAIIGFSAGGTVAALYSVNWHRDWLSKLVNAPKDTLKPSAVILAYPVVDFAV
MNEVTKNNRNTPAAGVLFKMMSLALGSGKFTEDDLRELSATYHVDENTPPTFIWTTADDDVVPVESIISYVNALARNKVP
FEFHVFEKGVHGLSLADKTTASNPQHVNPPVAKWIELALSWLERHIE

Specific function: B.fibrisolvens is located in the rumen of ruminant animals, where it contributes to the animal's digestion of plant material by hydrolyzing hemicellulose with its xylanases [H]

COG id: COG0657

COG function: function code I; Esterase/lipase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 10 (cellulase F) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013094
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF07859 Abhydrolase_3; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 31876; Mature: 31876

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIEVIRLRDDRPVTLTSYILDTSPEISWGRRPAIIICPGGGFVRTSDREAEPVASIFLS
CEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCEEECCCCCCHHHHHHHHH
RGYHAFVLRYSTESMGVSKVYPDVVIELANAVVSIRRNADKWNIDPGRIAIIGFSAGGTV
CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCE
AALYSVNWHRDWLSKLVNAPKDTLKPSAVILAYPVVDFAVMNEVTKNNRNTPAAGVLFKM
EEEEECCCCHHHHHHHHCCCHHHCCCCEEEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHH
MSLALGSGKFTEDDLRELSATYHVDENTPPTFIWTTADDDVVPVESIISYVNALARNKVP
HHHHHCCCCCCHHHHHHHHHEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCC
FEFHVFEKGVHGLSLADKTTASNPQHVNPPVAKWIELALSWLERHIE
EEEEHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRIEVIRLRDDRPVTLTSYILDTSPEISWGRRPAIIICPGGGFVRTSDREAEPVASIFLS
CEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCEEECCCCCCHHHHHHHHH
RGYHAFVLRYSTESMGVSKVYPDVVIELANAVVSIRRNADKWNIDPGRIAIIGFSAGGTV
CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCE
AALYSVNWHRDWLSKLVNAPKDTLKPSAVILAYPVVDFAVMNEVTKNNRNTPAAGVLFKM
EEEEECCCCHHHHHHHHCCCHHHCCCCEEEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHH
MSLALGSGKFTEDDLRELSATYHVDENTPPTFIWTTADDDVVPVESIISYVNALARNKVP
HHHHHCCCCCCHHHHHHHHHEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCC
FEFHVFEKGVHGLSLADKTTASNPQHVNPPVAKWIELALSWLERHIE
EEEEHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1909424 [H]