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The map label for this gene is rpoE [H]

Identifier: 159041701

GI number: 159041701

Start: 1192464

End: 1193099

Strand: Reverse

Name: rpoE [H]

Synonym: Cmaq_1136

Alternate gene names: 159041701

Gene position: 1193099-1192464 (Counterclockwise)

Preceding gene: 159041703

Following gene: 159041699

Centisome position: 57.43

GC content: 46.07

Gene sequence:

>636_bases
ATGCGGCCTATGATGCAAGGTTTAAATAAGCCTAATCCATGTAGGGGTGTGTTTAGGGTAATAACAGTAGAGGATTACAT
TAGGGTTCCCCCCTCGGTGTTTAATGAACCTATTGATAAGATTGCCTACGAGCAGTTGAGAAGTAACTATGAGGGTAAGG
TTGATAGGGAGTTAGGGGTCTTTATAGCGGTATTCGATGTGAAGGTTGATAAGAGGGGTGTCATAGTTTACGGTGATGGT
GCAACATACCATAAGGTTTCCTTTAAGGCACTTGTCTTCGTCCCACTGATTAATGAGATTGTTGAGGGGGATGTGGTTGA
TGTTAAGGAGTATGGCGCCCACGTCAGAATAGGTGCCTTAACAGCCTTCATACATAGGTCCCAGGTAATGGATGAGAACG
TTGTACTCTTCGATAGGCAGAGCGGCGTCTTCATGGGGGAGAAGAATAGGCAGAAGAAGGTTGGTAGAGGGGATGTGGTT
AGGGCTAGGATAGTTGGGGTTAGTTACGTGTCGACGGCTAATGGAATTAGGTTAAACGTATCAATGACTATGAGGCAACC
CTTCTTGGGTAAAATTGAGTGGATTGAGGAGGCCACTAAGGCCAAGAAGAAGCCTCAGAGTAAGCCGGGGCAGTGA

Upstream 100 bases:

>100_bases
CGCAATCTTATTCGTATAACCCAGCATAAGGGCTCATTTAAGGATTCGTGTTAATAAATGTTTCTTGCTTGTTAAGCCTA
ATTTTAAGGTTTATTTCCCT

Downstream 100 bases:

>100_bases
TTTCCCGGTAAATGGAGCGGCAATTACTACGTAACGGCTTAATTATTATGCGTTAGCATCACAGCCTTAAGTATAGCCAA
CCATCAGCCATCTTCCTCAC

Product: DNA-directed RNA polymerase subunit E'

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MRPMMQGLNKPNPCRGVFRVITVEDYIRVPPSVFNEPIDKIAYEQLRSNYEGKVDRELGVFIAVFDVKVDKRGVIVYGDG
ATYHKVSFKALVFVPLINEIVEGDVVDVKEYGAHVRIGALTAFIHRSQVMDENVVLFDRQSGVFMGEKNRQKKVGRGDVV
RARIVGVSYVSTANGIRLNVSMTMRQPFLGKIEWIEEATKAKKKPQSKPGQ

Sequences:

>Translated_211_residues
MRPMMQGLNKPNPCRGVFRVITVEDYIRVPPSVFNEPIDKIAYEQLRSNYEGKVDRELGVFIAVFDVKVDKRGVIVYGDG
ATYHKVSFKALVFVPLINEIVEGDVVDVKEYGAHVRIGALTAFIHRSQVMDENVVLFDRQSGVFMGEKNRQKKVGRGDVV
RARIVGVSYVSTANGIRLNVSMTMRQPFLGKIEWIEEATKAKKKPQSKPGQ
>Mature_211_residues
MRPMMQGLNKPNPCRGVFRVITVEDYIRVPPSVFNEPIDKIAYEQLRSNYEGKVDRELGVFIAVFDVKVDKRGVIVYGDG
ATYHKVSFKALVFVPLINEIVEGDVVDVKEYGAHVRIGALTAFIHRSQVMDENVVLFDRQSGVFMGEKNRQKKVGRGDVV
RARIVGVSYVSTANGIRLNVSMTMRQPFLGKIEWIEEATKAKKKPQSKPGQ

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1095

COG function: function code K; DNA-directed RNA polymerase, subunit E'

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI24475814, Length=162, Percent_Identity=25.9259259259259, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI65301161, Length=162, Percent_Identity=25.9259259259259, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR022967
- InterPro:   IPR005576
- InterPro:   IPR004519 [H]

Pfam domain/function: PF03876 RNA_pol_Rpb7_N; PF00575 S1 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 23772; Mature: 23772

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPMMQGLNKPNPCRGVFRVITVEDYIRVPPSVFNEPIDKIAYEQLRSNYEGKVDRELGV
CCCHHHHCCCCCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
FIAVFDVKVDKRGVIVYGDGATYHKVSFKALVFVPLINEIVEGDVVDVKEYGAHVRIGAL
EEEEEEEEECCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHCCCEEEHHHCCCEEEHHHH
TAFIHRSQVMDENVVLFDRQSGVFMGEKNRQKKVGRGDVVRARIVGVSYVSTANGIRLNV
HHHHHHHHHCCCCEEEEECCCCCEECCCCCCCCCCCCCEEEEEEEEEEEEECCCCEEEEE
SMTMRQPFLGKIEWIEEATKAKKKPQSKPGQ
EEEECCCCCHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MRPMMQGLNKPNPCRGVFRVITVEDYIRVPPSVFNEPIDKIAYEQLRSNYEGKVDRELGV
CCCHHHHCCCCCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
FIAVFDVKVDKRGVIVYGDGATYHKVSFKALVFVPLINEIVEGDVVDVKEYGAHVRIGAL
EEEEEEEEECCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHCCCEEEHHHCCCEEEHHHH
TAFIHRSQVMDENVVLFDRQSGVFMGEKNRQKKVGRGDVVRARIVGVSYVSTANGIRLNV
HHHHHHHHHCCCCEEEEECCCCCEECCCCCCCCCCCCCEEEEEEEEEEEEECCCCEEEEE
SMTMRQPFLGKIEWIEEATKAKKKPQSKPGQ
EEEECCCCCHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8127719 [H]