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The map label for this gene is 159041617

Identifier: 159041617

GI number: 159041617

Start: 1100622

End: 1101146

Strand: Reverse

Name: 159041617

Synonym: Cmaq_1050

Alternate gene names: NA

Gene position: 1101146-1100622 (Counterclockwise)

Preceding gene: 159041618

Following gene: 159041616

Centisome position: 53.0

GC content: 42.29

Gene sequence:

>525_bases
ATGGTTATTAATAGGCATATGCTCAGTAAGAAGGATATTAAGAGGCTTATGAATGAGGTTCCATGGTTAAGTGAAGTTTA
CGGGAACATTGAGGAAGCCGAGGTTATTAAGGCTAATGATAACTTGGAAATCTACAGAATAATGAATGACACCGCATTAG
TTAAGGCTGTGGTAAGCGTAAGTAACACAAGCATGAACCTAACCTACCCAACACTACTTGCCGCTAATAAGTACCCATCA
CTGGTGAAGTACTACCCAGTGGTTCAGGTTGATGAGGGTGCTGTTAAGCCAATAGCCACTGGGGCTGATGTAATGAGGCC
TGGTATAAGGGAATTAACCGGTTCATTTAAACCAGGGGAAATTGTACTGGTTAAGAGCCCTGGGGGGAGGGTAATAGCTG
TGACTGTTAGCCTATACAGTAGTGATGAGGTGATTAACATGAGTAGGGGGAAGGTTCTTAAGAATATTCACCACGTTGAT
GATTACGTCTGGAGATTAATGAGTGAAGTGCATGAGCATAAGTAA

Upstream 100 bases:

>100_bases
GATGAGGAGCAGGCGTGTGTTGAGGTTGTTGATAGCCTTGATGATGCCAGGGTTATTGCTAAGAAATTCACCGACTCAGT
GTGCATGTAGAGTGGGGGTT

Downstream 100 bases:

>100_bases
CGTAATAGCCTCCTACAATGAGTTAAGTAAACTCGACTTAAGGGTGCTTAGGGTAATTGAGGTCCTCCACAGGAATCACG
AGTACGTTCCGGTTAAGAGG

Product: PUA domain-containing protein

Products: NA

Alternate protein names: PUA Domain Containing Protein

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MVINRHMLSKKDIKRLMNEVPWLSEVYGNIEEAEVIKANDNLEIYRIMNDTALVKAVVSVSNTSMNLTYPTLLAANKYPS
LVKYYPVVQVDEGAVKPIATGADVMRPGIRELTGSFKPGEIVLVKSPGGRVIAVTVSLYSSDEVINMSRGKVLKNIHHVD
DYVWRLMSEVHEHK

Sequences:

>Translated_174_residues
MVINRHMLSKKDIKRLMNEVPWLSEVYGNIEEAEVIKANDNLEIYRIMNDTALVKAVVSVSNTSMNLTYPTLLAANKYPS
LVKYYPVVQVDEGAVKPIATGADVMRPGIRELTGSFKPGEIVLVKSPGGRVIAVTVSLYSSDEVINMSRGKVLKNIHHVD
DYVWRLMSEVHEHK
>Mature_174_residues
MVINRHMLSKKDIKRLMNEVPWLSEVYGNIEEAEVIKANDNLEIYRIMNDTALVKAVVSVSNTSMNLTYPTLLAANKYPS
LVKYYPVVQVDEGAVKPIATGADVMRPGIRELTGSFKPGEIVLVKSPGGRVIAVTVSLYSSDEVINMSRGKVLKNIHHVD
DYVWRLMSEVHEHK

Specific function: Unknown

COG id: COG2016

COG function: function code J; Predicted RNA-binding protein (contains PUA domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI7662502, Length=150, Percent_Identity=24.6666666666667, Blast_Score=64, Evalue=5e-11,
Organism=Homo sapiens, GI212276121, Length=152, Percent_Identity=24.3421052631579, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI25153759, Length=162, Percent_Identity=29.6296296296296, Blast_Score=67, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6320844, Length=166, Percent_Identity=23.4939759036145, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19510; Mature: 19510

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS50890 PUA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVINRHMLSKKDIKRLMNEVPWLSEVYGNIEEAEVIKANDNLEIYRIMNDTALVKAVVSV
CCCCCHHCCHHHHHHHHHHCCCHHHHHCCCCCCEEEECCCCEEEEEEECCHHHHHHHHHH
SNTSMNLTYPTLLAANKYPSLVKYYPVVQVDEGAVKPIATGADVMRPGIRELTGSFKPGE
CCCCEEEECHHEEECCCCCCHHHCCCEEEECCCCCCCCCCCHHHHCCCHHHHCCCCCCCE
IVLVKSPGGRVIAVTVSLYSSDEVINMSRGKVLKNIHHVDDYVWRLMSEVHEHK
EEEEECCCCEEEEEEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVINRHMLSKKDIKRLMNEVPWLSEVYGNIEEAEVIKANDNLEIYRIMNDTALVKAVVSV
CCCCCHHCCHHHHHHHHHHCCCHHHHHCCCCCCEEEECCCCEEEEEEECCHHHHHHHHHH
SNTSMNLTYPTLLAANKYPSLVKYYPVVQVDEGAVKPIATGADVMRPGIRELTGSFKPGE
CCCCEEEECHHEEECCCCCCHHHCCCEEEECCCCCCCCCCCHHHHCCCHHHHCCCCCCCE
IVLVKSPGGRVIAVTVSLYSSDEVINMSRGKVLKNIHHVDDYVWRLMSEVHEHK
EEEEECCCCEEEEEEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA