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The map label for this gene is rio2 [H]

Identifier: 159041616

GI number: 159041616

Start: 1099685

End: 1100635

Strand: Reverse

Name: rio2 [H]

Synonym: Cmaq_1049

Alternate gene names: 159041616

Gene position: 1100635-1099685 (Counterclockwise)

Preceding gene: 159041617

Following gene: 159041614

Centisome position: 52.98

GC content: 42.06

Gene sequence:

>951_bases
ATGAGCATAAGTAACGTAATAGCCTCCTACAATGAGTTAAGTAAACTCGACTTAAGGGTGCTTAGGGTAATTGAGGTCCT
CCACAGGAATCACGAGTACGTTCCGGTTAAGAGGATTGTGAATTACATGGGTTTAAGTGAGGAGGTTATTGATAAGTCTA
TTTCAAAGATGAATAAGCTTAAACTACTGGTTAGGAGGGGGCCTGATAACGTTAGGTTAACATTCCCAGCCTACGACATA
CTGTCAATACACACCATGGTTAAGAAGGGTGTTATAGATGCCATAGCCCCAACACCCCTTGGTGTTGGTAAGGAATCAGA
CGTATACGCTGCTGATGCGCCAAATGGGGAAAAATACGCCTTAAAGTTCCATAGGATTGGTAGAGTTAGTTTCAGGAATA
CTAGGAAGTATAGGGTTTGGATTGGGGAGAGGAGGCATGTTACTTGGCTTTACGAAGCTAAGATATCAGCACACATGGAG
TACCTAGCGTTAACCGAAGCCTATAAGGCTAAGGTACCTGCACCAAGGCCTAGGGCTGTGACAAGGCACTTGGTGGCCAT
GGAGTACGTTAATGGTGTTGAATTATTTAGGGTTAAGTTAAGTAATCCTGAGGATGTTCTTGAACAGATTATTTCAGCCA
TTGAGGATCTCCTGAGGATAAACATTATTCACGGTGACTTAAACGAATACAATATCCTAGTTAATCCAAGTGATGAGAAA
ATAACAATAATAGATTGGCCCCAGTGGATGTACGCTAACGTTAAGGGATCTAGGGTAATCCTAATGAGGGACCTCAACAT
TATACTGAGGCACTTTAAGTCAAACTACGGGTTAAACGTAGGCATTGATGCAGTTATGAGTAGGCTAGCCCCATTAATAC
CGAACAGTGAATTACCACCTGAGAAGGCGTACTCCAGGTTAATTAAGAGAGTAACATCCTTAGTTAAATGA

Upstream 100 bases:

>100_bases
CTATACAGTAGTGATGAGGTGATTAACATGAGTAGGGGGAAGGTTCTTAAGAATATTCACCACGTTGATGATTACGTCTG
GAGATTAATGAGTGAAGTGC

Downstream 100 bases:

>100_bases
CTCAATTACAATACATCAATTTAACATTTAAACAATTAGTATTATTAAACTCAATTTTGATTAAACATCCCCCTGTATAG
AGTTATTCCAGTGGTGAATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MSISNVIASYNELSKLDLRVLRVIEVLHRNHEYVPVKRIVNYMGLSEEVIDKSISKMNKLKLLVRRGPDNVRLTFPAYDI
LSIHTMVKKGVIDAIAPTPLGVGKESDVYAADAPNGEKYALKFHRIGRVSFRNTRKYRVWIGERRHVTWLYEAKISAHME
YLALTEAYKAKVPAPRPRAVTRHLVAMEYVNGVELFRVKLSNPEDVLEQIISAIEDLLRINIIHGDLNEYNILVNPSDEK
ITIIDWPQWMYANVKGSRVILMRDLNIILRHFKSNYGLNVGIDAVMSRLAPLIPNSELPPEKAYSRLIKRVTSLVK

Sequences:

>Translated_316_residues
MSISNVIASYNELSKLDLRVLRVIEVLHRNHEYVPVKRIVNYMGLSEEVIDKSISKMNKLKLLVRRGPDNVRLTFPAYDI
LSIHTMVKKGVIDAIAPTPLGVGKESDVYAADAPNGEKYALKFHRIGRVSFRNTRKYRVWIGERRHVTWLYEAKISAHME
YLALTEAYKAKVPAPRPRAVTRHLVAMEYVNGVELFRVKLSNPEDVLEQIISAIEDLLRINIIHGDLNEYNILVNPSDEK
ITIIDWPQWMYANVKGSRVILMRDLNIILRHFKSNYGLNVGIDAVMSRLAPLIPNSELPPEKAYSRLIKRVTSLVK
>Mature_315_residues
SISNVIASYNELSKLDLRVLRVIEVLHRNHEYVPVKRIVNYMGLSEEVIDKSISKMNKLKLLVRRGPDNVRLTFPAYDIL
SIHTMVKKGVIDAIAPTPLGVGKESDVYAADAPNGEKYALKFHRIGRVSFRNTRKYRVWIGERRHVTWLYEAKISAHMEY
LALTEAYKAKVPAPRPRAVTRHLVAMEYVNGVELFRVKLSNPEDVLEQIISAIEDLLRINIIHGDLNEYNILVNPSDEKI
TIIDWPQWMYANVKGSRVILMRDLNIILRHFKSNYGLNVGIDAVMSRLAPLIPNSELPPEKAYSRLIKRVTSLVK

Specific function: Unknown

COG id: COG0478

COG function: function code T; RIO-like serine/threonine protein kinase fused to N-terminal HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 protein kinase domain [H]

Homologues:

Organism=Homo sapiens, GI229331971, Length=270, Percent_Identity=34.0740740740741, Blast_Score=161, Evalue=7e-40,
Organism=Homo sapiens, GI229331967, Length=270, Percent_Identity=34.0740740740741, Blast_Score=161, Evalue=7e-40,
Organism=Caenorhabditis elegans, GI32564178, Length=263, Percent_Identity=30.4182509505703, Blast_Score=140, Evalue=1e-33,
Organism=Saccharomyces cerevisiae, GI6324122, Length=272, Percent_Identity=30.8823529411765, Blast_Score=138, Evalue=9e-34,
Organism=Drosophila melanogaster, GI24649986, Length=269, Percent_Identity=33.0855018587361, Blast_Score=153, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011009
- InterPro:   IPR000719
- InterPro:   IPR018934
- InterPro:   IPR015285
- InterPro:   IPR000687
- InterPro:   IPR018935 [H]

Pfam domain/function: PF01163 RIO1; PF09202 Rio2_N [H]

EC number: =2.7.11.1 [H]

Molecular weight: Translated: 36233; Mature: 36102

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: PS50011 PROTEIN_KINASE_DOM ; PS01245 RIO1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSISNVIASYNELSKLDLRVLRVIEVLHRNHEYVPVKRIVNYMGLSEEVIDKSISKMNKL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
KLLVRRGPDNVRLTFPAYDILSIHTMVKKGVIDAIAPTPLGVGKESDVYAADAPNGEKYA
HHHEECCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCEEE
LKFHRIGRVSFRNTRKYRVWIGERRHVTWLYEAKISAHMEYLALTEAYKAKVPAPRPRAV
EEEEHHCCEEECCCCEEEEEECCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCHHH
TRHLVAMEYVNGVELFRVKLSNPEDVLEQIISAIEDLLRINIIHGDLNEYNILVNPSDEK
HHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEECCCCCE
ITIIDWPQWMYANVKGSRVILMRDLNIILRHFKSNYGLNVGIDAVMSRLAPLIPNSELPP
EEEEECCCCEEECCCCCEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCH
EKAYSRLIKRVTSLVK
HHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SISNVIASYNELSKLDLRVLRVIEVLHRNHEYVPVKRIVNYMGLSEEVIDKSISKMNKL
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
KLLVRRGPDNVRLTFPAYDILSIHTMVKKGVIDAIAPTPLGVGKESDVYAADAPNGEKYA
HHHEECCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCEEE
LKFHRIGRVSFRNTRKYRVWIGERRHVTWLYEAKISAHMEYLALTEAYKAKVPAPRPRAV
EEEEHHCCEEECCCCEEEEEECCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCHHH
TRHLVAMEYVNGVELFRVKLSNPEDVLEQIISAIEDLLRINIIHGDLNEYNILVNPSDEK
HHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEECCCCCE
ITIIDWPQWMYANVKGSRVILMRDLNIILRHFKSNYGLNVGIDAVMSRLAPLIPNSELPP
EEEEECCCCEEECCCCCEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCH
EKAYSRLIKRVTSLVK
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]