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The map label for this gene is 159041550

Identifier: 159041550

GI number: 159041550

Start: 1030831

End: 1031385

Strand: Reverse

Name: 159041550

Synonym: Cmaq_0980

Alternate gene names: NA

Gene position: 1031385-1030831 (Counterclockwise)

Preceding gene: 159041551

Following gene: 159041549

Centisome position: 49.64

GC content: 40.72

Gene sequence:

>555_bases
ATGGCTAATTATTACTTCGGTGGACCACTTGAGATACCCTTAGAGAAGGCGAAGACCCTAGTTACTGAGGAGGTTAAGAA
CTCCATTGAGGTAAATCTTAAGGTGCAGGTTGAGGTTAAGGATGACTCAGTGGTATTAACACCAATGCAGGATGCAAACC
CAGACTCAGTTATTAAGGCTAGGCAGATTATTCAAGCGCTAGCCCTAGGCTTCTCAAGGGATGATGCATTAGAGTTACTT
AACGATGATAAGTACCTTGATGTAGTGGATTTAAGCGACTACATTGGTAAAGATAAGGAGAATCACTTAAGTAGGATTAA
GGCAATAATAATTGGTGAGGGCGGTAAGGTTAAGAGGAATCTTGAGGAATTAACTGAAACCAAGATTGCTGTGAAGGATA
AGGCAGTGGGCATAATAGGTAATTACGATAATGTTAGGGCTGTTAGGGATGCAATAGTAATGTTGATTAACGGTAGGCAA
CACTCCACAGTGTATAGGTGGCTACAGAGGTGGAAGAGGGATTTGAATTTAAGGAGAATTGAGGGTAATTTTTAA

Upstream 100 bases:

>100_bases
GGATTTAAATTAAGCATCTACTTAAGGAGGCATGCCTCTAATTCCTACACATGTTGGGTTAAGGTTTATTTAACTCCAGT
GGGTTAGGTTATTGAGCATT

Downstream 100 bases:

>100_bases
TTAAGTCAATTAAAGCTAACCCAGAAAACCCACCGCGCTTAAAAGCGCTATCCAAGGCAGGTTAATTAATGATTGAGGTT
AAGGGTAAAGTTAAGGTTGA

Product: putative RNA-processing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MANYYFGGPLEIPLEKAKTLVTEEVKNSIEVNLKVQVEVKDDSVVLTPMQDANPDSVIKARQIIQALALGFSRDDALELL
NDDKYLDVVDLSDYIGKDKENHLSRIKAIIIGEGGKVKRNLEELTETKIAVKDKAVGIIGNYDNVRAVRDAIVMLINGRQ
HSTVYRWLQRWKRDLNLRRIEGNF

Sequences:

>Translated_184_residues
MANYYFGGPLEIPLEKAKTLVTEEVKNSIEVNLKVQVEVKDDSVVLTPMQDANPDSVIKARQIIQALALGFSRDDALELL
NDDKYLDVVDLSDYIGKDKENHLSRIKAIIIGEGGKVKRNLEELTETKIAVKDKAVGIIGNYDNVRAVRDAIVMLINGRQ
HSTVYRWLQRWKRDLNLRRIEGNF
>Mature_183_residues
ANYYFGGPLEIPLEKAKTLVTEEVKNSIEVNLKVQVEVKDDSVVLTPMQDANPDSVIKARQIIQALALGFSRDDALELLN
DDKYLDVVDLSDYIGKDKENHLSRIKAIIIGEGGKVKRNLEELTETKIAVKDKAVGIIGNYDNVRAVRDAIVMLINGRQH
STVYRWLQRWKRDLNLRRIEGNF

Specific function: Unknown

COG id: COG1094

COG function: function code R; Predicted RNA-binding protein (contains KH domains)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 KH domains [H]

Homologues:

Organism=Homo sapiens, GI10047140, Length=166, Percent_Identity=34.9397590361446, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17537417, Length=155, Percent_Identity=31.6129032258064, Blast_Score=67, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6324720, Length=159, Percent_Identity=31.4465408805031, Blast_Score=74, Evalue=1e-14,
Organism=Drosophila melanogaster, GI20129085, Length=151, Percent_Identity=31.1258278145695, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004087
- InterPro:   IPR019964
- InterPro:   IPR004088
- InterPro:   IPR018111 [H]

Pfam domain/function: PF00013 KH_1 [H]

EC number: NA

Molecular weight: Translated: 20892; Mature: 20761

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANYYFGGPLEIPLEKAKTLVTEEVKNSIEVNLKVQVEVKDDSVVLTPMQDANPDSVIKA
CCCCCCCCCEECCHHHHHHHHHHHHHCCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHH
RQIIQALALGFSRDDALELLNDDKYLDVVDLSDYIGKDKENHLSRIKAIIIGEGGKVKRN
HHHHHHHHCCCCCCHHHHHHCCCCEEEEEECHHHHCCCCHHHHHHEEEEEECCCCCHHHH
LEELTETKIAVKDKAVGIIGNYDNVRAVRDAIVMLINGRQHSTVYRWLQRWKRDLNLRRI
HHHHHHHHHEECCCEEEEECCCCHHHHHHHHHEEEECCCCHHHHHHHHHHHHHCCCEEEE
EGNF
CCCC
>Mature Secondary Structure 
ANYYFGGPLEIPLEKAKTLVTEEVKNSIEVNLKVQVEVKDDSVVLTPMQDANPDSVIKA
CCCCCCCCEECCHHHHHHHHHHHHHCCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHH
RQIIQALALGFSRDDALELLNDDKYLDVVDLSDYIGKDKENHLSRIKAIIIGEGGKVKRN
HHHHHHHHCCCCCCHHHHHHCCCCEEEEEECHHHHCCCCHHHHHHEEEEEECCCCCHHHH
LEELTETKIAVKDKAVGIIGNYDNVRAVRDAIVMLINGRQHSTVYRWLQRWKRDLNLRRI
HHHHHHHHHEECCCEEEEECCCCHHHHHHHHHEEEECCCCHHHHHHHHHHHHHCCCEEEE
EGNF
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]