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The map label for this gene is dapA [H]

Identifier: 159041505

GI number: 159041505

Start: 980733

End: 981614

Strand: Reverse

Name: dapA [H]

Synonym: Cmaq_0935

Alternate gene names: 159041505

Gene position: 981614-980733 (Counterclockwise)

Preceding gene: 159041506

Following gene: 159041501

Centisome position: 47.25

GC content: 44.78

Gene sequence:

>882_bases
ATGGAGGGTGTGTTGGTTGCTTTAACAATACCCTTTAAGAATGGGAGGGTTGATGCCGATGGTTTGTCTGCACATGTTTC
ATCACTTGTTAAGGATGGGGTCAATGGCTTCTTCCCCCTCGGCACCACCGGTATGGGTGTTTTACTCAACCTTGAGGAGA
GGGAGGCTGTTATTAAGACTGTGGCTGAGGCTTCAGGTAATAAGCCTATTGTTGTTCAAGTTGGTTCACTGGATTGGGAT
ACCGTTGCCGGTACTGTTAAGCTTGCTGAGAAGTATGGTGCATCAGCGGTTGCCTCAATTGTACCTATTTACTATAGGCC
GGATTATGAAACAATAAGGAGGTATTTCATGAAGCTGAATCAATTAACCAAACTTCCAACGTTCATATATAATATCCCAG
GTAACGCTGGGTTTAACGTGACTCCGGATATTGTTGCCAGGTTAATTAAGGATGGGGTTAGGATCACTGGAGTAAAGGAT
AGTAGTGGTGACTTGGGTCAGTTAATGCAGTTCATTGAAATGGGACTGGAGGTATTTAATGGTTCAGACCACATGATAGC
GCCATCAGTAATAGTGGGGGCTAAGGGGTGTATTTCAGCTTTATCCAACTCAATAACTAACCTAGTTATCGACACGTATA
GGAGGGCTAAGGATGGAGACGTGAATAATGCATTAAGGACACAGGCCTTAGTCACTAAGGTGAGGGATACCGCCAATAAG
TATCCAAGACCAGCAGTGCATTATAGCTTAGTGAAACTCCTCAAGTACGACTTCGGGGGTGTTAAGGAACCATTAGTAAG
GGGCTTAACTAGGGAGGAGGAGGAATCCCTCGCATCAGACTTAAGTAAACTGGGCTTCAGGGTAAGGGTTTCAGGGGTTT
AA

Upstream 100 bases:

>100_bases
AATACCTAATTTTACCATAACCGTAAGATTAAGTATCACTTATTAGGCTTAACCCTACATTACCCAGAGTATTTTTAAGC
GCACTAATTAATAGGCTATT

Downstream 100 bases:

>100_bases
ACGTAAATATTGTATTTAACAATAGCCATTGGCTCAATATTCCTCAATATGTAGACCTCCTTATAAAAGCCCTTGTTTAA
AACCCCTATGAATAGGAAGT

Product: dihydrodipicolinate synthetase

Products: NA

Alternate protein names: DHDPS [H]

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MEGVLVALTIPFKNGRVDADGLSAHVSSLVKDGVNGFFPLGTTGMGVLLNLEEREAVIKTVAEASGNKPIVVQVGSLDWD
TVAGTVKLAEKYGASAVASIVPIYYRPDYETIRRYFMKLNQLTKLPTFIYNIPGNAGFNVTPDIVARLIKDGVRITGVKD
SSGDLGQLMQFIEMGLEVFNGSDHMIAPSVIVGAKGCISALSNSITNLVIDTYRRAKDGDVNNALRTQALVTKVRDTANK
YPRPAVHYSLVKLLKYDFGGVKEPLVRGLTREEEESLASDLSKLGFRVRVSGV

Sequences:

>Translated_293_residues
MEGVLVALTIPFKNGRVDADGLSAHVSSLVKDGVNGFFPLGTTGMGVLLNLEEREAVIKTVAEASGNKPIVVQVGSLDWD
TVAGTVKLAEKYGASAVASIVPIYYRPDYETIRRYFMKLNQLTKLPTFIYNIPGNAGFNVTPDIVARLIKDGVRITGVKD
SSGDLGQLMQFIEMGLEVFNGSDHMIAPSVIVGAKGCISALSNSITNLVIDTYRRAKDGDVNNALRTQALVTKVRDTANK
YPRPAVHYSLVKLLKYDFGGVKEPLVRGLTREEEESLASDLSKLGFRVRVSGV
>Mature_293_residues
MEGVLVALTIPFKNGRVDADGLSAHVSSLVKDGVNGFFPLGTTGMGVLLNLEEREAVIKTVAEASGNKPIVVQVGSLDWD
TVAGTVKLAEKYGASAVASIVPIYYRPDYETIRRYFMKLNQLTKLPTFIYNIPGNAGFNVTPDIVARLIKDGVRITGVKD
SSGDLGQLMQFIEMGLEVFNGSDHMIAPSVIVGAKGCISALSNSITNLVIDTYRRAKDGDVNNALRTQALVTKVRDTANK
YPRPAVHYSLVKLLKYDFGGVKEPLVRGLTREEEESLASDLSKLGFRVRVSGV

Specific function: Unknown

COG id: COG0329

COG function: function code EM; Dihydrodipicolinate synthase/N-acetylneuraminate lyase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHDPS family [H]

Homologues:

Organism=Homo sapiens, GI31543060, Length=296, Percent_Identity=26.0135135135135, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI13540533, Length=247, Percent_Identity=24.6963562753036, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI87082415, Length=260, Percent_Identity=27.6923076923077, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789620, Length=291, Percent_Identity=29.2096219931272, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786463, Length=223, Percent_Identity=27.3542600896861, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788823, Length=230, Percent_Identity=26.5217391304348, Blast_Score=82, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005263
- InterPro:   IPR002220
- InterPro:   IPR020625
- InterPro:   IPR020624 [H]

Pfam domain/function: PF00701 DHDPS [H]

EC number: =4.2.1.52 [H]

Molecular weight: Translated: 31694; Mature: 31694

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS00666 DHDPS_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGVLVALTIPFKNGRVDADGLSAHVSSLVKDGVNGFFPLGTTGMGVLLNLEEREAVIKT
CCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCEEEEECHHHHHHHHH
VAEASGNKPIVVQVGSLDWDTVAGTVKLAEKYGASAVASIVPIYYRPDYETIRRYFMKLN
HHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCHHHHHHHEEEEECCCHHHHHHHHHHHH
QLTKLPTFIYNIPGNAGFNVTPDIVARLIKDGVRITGVKDSSGDLGQLMQFIEMGLEVFN
HHHHCCCEEEECCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHCC
GSDHMIAPSVIVGAKGCISALSNSITNLVIDTYRRAKDGDVNNALRTQALVTKVRDTANK
CCCCEECCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
YPRPAVHYSLVKLLKYDFGGVKEPLVRGLTREEEESLASDLSKLGFRVRVSGV
CCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHCCEEEEECCC
>Mature Secondary Structure
MEGVLVALTIPFKNGRVDADGLSAHVSSLVKDGVNGFFPLGTTGMGVLLNLEEREAVIKT
CCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCEEEEECHHHHHHHHH
VAEASGNKPIVVQVGSLDWDTVAGTVKLAEKYGASAVASIVPIYYRPDYETIRRYFMKLN
HHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCHHHHHHHEEEEECCCHHHHHHHHHHHH
QLTKLPTFIYNIPGNAGFNVTPDIVARLIKDGVRITGVKDSSGDLGQLMQFIEMGLEVFN
HHHHCCCEEEECCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHCC
GSDHMIAPSVIVGAKGCISALSNSITNLVIDTYRRAKDGDVNNALRTQALVTKVRDTANK
CCCCEECCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
YPRPAVHYSLVKLLKYDFGGVKEPLVRGLTREEEESLASDLSKLGFRVRVSGV
CCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA