Click here to switch to the map view.

The map label for this gene is 159041056

Identifier: 159041056

GI number: 159041056

Start: 512717

End: 513286

Strand: Reverse

Name: 159041056

Synonym: Cmaq_0473

Alternate gene names: NA

Gene position: 513286-512717 (Counterclockwise)

Preceding gene: 159041057

Following gene: 159041054

Centisome position: 24.71

GC content: 41.4

Gene sequence:

>570_bases
ATGCTGCCTAATAGGGATTCCATTAAGGCTAAGTTAAGGGAGTATGAGGACGCCAGGGATAAGGTGATTAACACTGGCAT
TAGGTTAAATAGGTTATCTAAATCAGTAATATACTCGGTTATTAGGAATGATTGGGAGGCAGCGGACAAGTACTTAAATG
ACATGAGGAGGGAGTTAGAGTCATTAATGAGCTTAATTAAACAGTACCCATTCTACTACGATAAGGCTGCAGTAAGCTTC
CAGGAGTACGCTGAGGCCTACATAATGTATGAGTTCAATAAGAATGGTAAAATACCCACCATTGAGGAGGTTGGGGTTGA
TGAATTAGCCTACTTAAACGGGTTAATGGAGTTCACGGGTGAATTATCGAGGAAGGCCACTGAGGAGTTGATTAGGGATA
ACTTGGACTACGCCCTTAAGGCTAAGGAAACCATGGAGGATATTTACCTAGACATGCTCTACATGGAGTTCAGGGACTTC
GAAATGAGGAAGAAAGTCGACTACGTAGCTAACAACATTAATTGGTTAAACGAGAAAATATTCTACAAGACGCTAAACAA
GGGGAGGTAA

Upstream 100 bases:

>100_bases
AAATTGAGGAAACATATGGGGTTAAGTACGAGGGATGAGGCTCATTAAGTCAACGTTAAGCAACTTATATTAAGTAAGCC
CCAGTGGCCCACTGGGAATC

Downstream 100 bases:

>100_bases
GGTAATTAAATAATTAAGGCATATATGTAATTCAGTGACCCGTTTTATGAGCAATTAACCCACATTACGTGAAGCCGAAG
CGTACATTAGCCTCACCCTC

Product: haloacid dehalogenase superfamily protein

Products: NA

Alternate protein names: Translin Protein; Translin Family Protein

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MLPNRDSIKAKLREYEDARDKVINTGIRLNRLSKSVIYSVIRNDWEAADKYLNDMRRELESLMSLIKQYPFYYDKAAVSF
QEYAEAYIMYEFNKNGKIPTIEEVGVDELAYLNGLMEFTGELSRKATEELIRDNLDYALKAKETMEDIYLDMLYMEFRDF
EMRKKVDYVANNINWLNEKIFYKTLNKGR

Sequences:

>Translated_189_residues
MLPNRDSIKAKLREYEDARDKVINTGIRLNRLSKSVIYSVIRNDWEAADKYLNDMRRELESLMSLIKQYPFYYDKAAVSF
QEYAEAYIMYEFNKNGKIPTIEEVGVDELAYLNGLMEFTGELSRKATEELIRDNLDYALKAKETMEDIYLDMLYMEFRDF
EMRKKVDYVANNINWLNEKIFYKTLNKGR
>Mature_189_residues
MLPNRDSIKAKLREYEDARDKVINTGIRLNRLSKSVIYSVIRNDWEAADKYLNDMRRELESLMSLIKQYPFYYDKAAVSF
QEYAEAYIMYEFNKNGKIPTIEEVGVDELAYLNGLMEFTGELSRKATEELIRDNLDYALKAKETMEDIYLDMLYMEFRDF
EMRKKVDYVANNINWLNEKIFYKTLNKGR

Specific function: Unknown

COG id: COG2178

COG function: function code J; Predicted RNA-binding protein of the translin family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22581; Mature: 22581

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPNRDSIKAKLREYEDARDKVINTGIRLNRLSKSVIYSVIRNDWEAADKYLNDMRRELE
CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLMSLIKQYPFYYDKAAVSFQEYAEAYIMYEFNKNGKIPTIEEVGVDELAYLNGLMEFTG
HHHHHHHHCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHCCHHHHHHHHHHHHHHH
ELSRKATEELIRDNLDYALKAKETMEDIYLDMLYMEFRDFEMRKKVDYVANNINWLNEKI
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FYKTLNKGR
HHHHHCCCC
>Mature Secondary Structure
MLPNRDSIKAKLREYEDARDKVINTGIRLNRLSKSVIYSVIRNDWEAADKYLNDMRRELE
CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLMSLIKQYPFYYDKAAVSFQEYAEAYIMYEFNKNGKIPTIEEVGVDELAYLNGLMEFTG
HHHHHHHHCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHCCHHHHHHHHHHHHHHH
ELSRKATEELIRDNLDYALKAKETMEDIYLDMLYMEFRDFEMRKKVDYVANNINWLNEKI
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FYKTLNKGR
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA