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The map label for this gene is rsmB [H]

Identifier: 159040978

GI number: 159040978

Start: 431157

End: 432353

Strand: Reverse

Name: rsmB [H]

Synonym: Cmaq_0394

Alternate gene names: 159040978

Gene position: 432353-431157 (Counterclockwise)

Preceding gene: 159040979

Following gene: 159040977

Centisome position: 20.81

GC content: 45.45

Gene sequence:

>1197_bases
ATGCCTAAGCATCATACTGAGGGAGGAGTTAAGATTATTGAGGTAGCTAGGGGTATTGAGCTTGACCAAGAGGTTTACAG
GCATTTGCTTCAATACATGGATGATGGTGAATTAGACTCCTACTTTGAAAGCATTAGGAAGCCACCGAGAAGATACTACG
TTAGGGTTAATACACTGAAGGTGAGTACCGATGAATTACTAAGGAGGCTTAAGGAACATGGCATAACCGCTTACAGGGAT
GAGGTACTTGATGAGGCCATATGGCTCCCAACGGAGGGACCTAATAGGGTTGGGGCTAGTAGGAGGTATGTTGTTGCTGA
TAAGTACGCCTCAGAGAGCGTTTACCTAGGCTCCAACCTATACGGCCCAGGGGTACTCTACATGCCTAATGACATTCATG
CCGGTGATGAAGTCAACGTAGTATCCCCAAATGGTGACGTAGTTGCCTTAGGGGTCGCTAAAATTAATGCATCAGAATTC
AGGAGGGGGTTCAGGGGTATTGTTGTTGAAACCACTGAGTCAGTTTATAGGTTACCTAAGTTAAGGGATCTTGATGAGTG
GAGGTTCGGCTTATTCTATGAACAGTCCCTGCCGGCTCAATGGGTTGGTAGATTAATTGACCCAGGGCCTAATGAAACCA
TTATAGACCTATGCTCGGCACCAGGTGGTAAGGCAACCCACGTGGCTCAATTATCCGGTAATAAGGCAATCATCATTGCG
GTTGATAGGAGTTGGAGTAAGGTTAGGCAAATTGAGGGTAATGCAGCTAGACTGGGGGTTAGGTTAATGACTTACATTGA
GGATAGTAGGTTCCTTCACTTAAACCACCCTGAGTTTATTGGTAAGGCTGATAAAGTCCTCATTGACCCACCCTGCAGTG
ACGCTGGGGTTAGGCCTAAACTATACTATAGGTTAACCATGACTGACTTAATCAACCTAGTGGCCTACCAGAGGCAGTTC
ATTAAGGTTGCCTACAGTTTACTTAAGCCTAATGGATCATTAATATACTCCACATGTACGTTACCACCAATGGAGAATGA
GGATAATGTTAAATGGGCCACTGAGTTAGGCTTCAGGCTAGAGTACGTTAACGTACCTGCCGGTCAGAGGGCGTTTGACG
GAGTCTCAAGGAGGTTTCACCCACATATCCAAGATACACCAGGCTTCTTCATGGCTAAGTTAACTAAATTACCCTAG

Upstream 100 bases:

>100_bases
GGAGAATATCAAAGGTTAACCCTGAGGATGCCACCAGGGCCATCCTTAAGTCACTGGAGAGGTTTAAGAATAGGGCTAAG
TTAAGTGGACCATAGTAACC

Downstream 100 bases:

>100_bases
GCTTAATTGGGTAAGTTTAAAAGTTGAGTTGGGATTAATGAAGCGTGGAATCGATTTACTTGATTCAACATGGTAAGGCC
TTCGACGAGAAGATCGACCC

Product: Fmu (Sun) domain-containing protein

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 398; Mature: 397

Protein sequence:

>398_residues
MPKHHTEGGVKIIEVARGIELDQEVYRHLLQYMDDGELDSYFESIRKPPRRYYVRVNTLKVSTDELLRRLKEHGITAYRD
EVLDEAIWLPTEGPNRVGASRRYVVADKYASESVYLGSNLYGPGVLYMPNDIHAGDEVNVVSPNGDVVALGVAKINASEF
RRGFRGIVVETTESVYRLPKLRDLDEWRFGLFYEQSLPAQWVGRLIDPGPNETIIDLCSAPGGKATHVAQLSGNKAIIIA
VDRSWSKVRQIEGNAARLGVRLMTYIEDSRFLHLNHPEFIGKADKVLIDPPCSDAGVRPKLYYRLTMTDLINLVAYQRQF
IKVAYSLLKPNGSLIYSTCTLPPMENEDNVKWATELGFRLEYVNVPAGQRAFDGVSRRFHPHIQDTPGFFMAKLTKLP

Sequences:

>Translated_398_residues
MPKHHTEGGVKIIEVARGIELDQEVYRHLLQYMDDGELDSYFESIRKPPRRYYVRVNTLKVSTDELLRRLKEHGITAYRD
EVLDEAIWLPTEGPNRVGASRRYVVADKYASESVYLGSNLYGPGVLYMPNDIHAGDEVNVVSPNGDVVALGVAKINASEF
RRGFRGIVVETTESVYRLPKLRDLDEWRFGLFYEQSLPAQWVGRLIDPGPNETIIDLCSAPGGKATHVAQLSGNKAIIIA
VDRSWSKVRQIEGNAARLGVRLMTYIEDSRFLHLNHPEFIGKADKVLIDPPCSDAGVRPKLYYRLTMTDLINLVAYQRQF
IKVAYSLLKPNGSLIYSTCTLPPMENEDNVKWATELGFRLEYVNVPAGQRAFDGVSRRFHPHIQDTPGFFMAKLTKLP
>Mature_397_residues
PKHHTEGGVKIIEVARGIELDQEVYRHLLQYMDDGELDSYFESIRKPPRRYYVRVNTLKVSTDELLRRLKEHGITAYRDE
VLDEAIWLPTEGPNRVGASRRYVVADKYASESVYLGSNLYGPGVLYMPNDIHAGDEVNVVSPNGDVVALGVAKINASEFR
RGFRGIVVETTESVYRLPKLRDLDEWRFGLFYEQSLPAQWVGRLIDPGPNETIIDLCSAPGGKATHVAQLSGNKAIIIAV
DRSWSKVRQIEGNAARLGVRLMTYIEDSRFLHLNHPEFIGKADKVLIDPPCSDAGVRPKLYYRLTMTDLINLVAYQRQFI
KVAYSLLKPNGSLIYSTCTLPPMENEDNVKWATELGFRLEYVNVPAGQRAFDGVSRRFHPHIQDTPGFFMAKLTKLP

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI32698918, Length=373, Percent_Identity=27.8820375335121, Blast_Score=155, Evalue=5e-38,
Organism=Homo sapiens, GI76150625, Length=213, Percent_Identity=30.9859154929577, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI76150623, Length=213, Percent_Identity=30.9859154929577, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI270288818, Length=240, Percent_Identity=29.1666666666667, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI8922322, Length=240, Percent_Identity=29.1666666666667, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI270288816, Length=240, Percent_Identity=29.1666666666667, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI23199998, Length=240, Percent_Identity=29.1666666666667, Blast_Score=73, Evalue=6e-13,
Organism=Escherichia coli, GI2367212, Length=236, Percent_Identity=27.9661016949153, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87081985, Length=222, Percent_Identity=31.5315315315315, Blast_Score=91, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17536757, Length=236, Percent_Identity=32.2033898305085, Blast_Score=99, Evalue=4e-21,
Organism=Saccharomyces cerevisiae, GI6324268, Length=213, Percent_Identity=29.5774647887324, Blast_Score=95, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6319447, Length=159, Percent_Identity=27.6729559748428, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24668781, Length=424, Percent_Identity=27.8301886792453, Blast_Score=135, Evalue=5e-32,
Organism=Drosophila melanogaster, GI21356513, Length=343, Percent_Identity=28.8629737609329, Blast_Score=127, Evalue=9e-30,
Organism=Drosophila melanogaster, GI22024126, Length=215, Percent_Identity=29.7674418604651, Blast_Score=94, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 45053; Mature: 44922

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS50890 PUA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKHHTEGGVKIIEVARGIELDQEVYRHLLQYMDDGELDSYFESIRKPPRRYYVRVNTLK
CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEEEEEE
VSTDELLRRLKEHGITAYRDEVLDEAIWLPTEGPNRVGASRRYVVADKYASESVYLGSNL
ECHHHHHHHHHHCCCHHHHHHHHHHEEECCCCCCCCCCCCCEEEEEECCCCCEEEECCCC
YGPGVLYMPNDIHAGDEVNVVSPNGDVVALGVAKINASEFRRGFRGIVVETTESVYRLPK
CCCEEEECCCCCCCCCEEEEECCCCCEEEEEEEECCHHHHHCCCCCEEEEECHHHHHCCC
LRDLDEWRFGLFYEQSLPAQWVGRLIDPGPNETIIDLCSAPGGKATHVAQLSGNKAIIIA
CCCCCHHHHCEEECCCCCHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEECCCEEEEEE
VDRSWSKVRQIEGNAARLGVRLMTYIEDSRFLHLNHPEFIGKADKVLIDPPCSDAGVRPK
ECCCHHHHHHCCCCHHHHHHHEEEEECCCCEEEECCHHHCCCCCCEEECCCCCCCCCCCE
LYYRLTMTDLINLVAYQRQFIKVAYSLLKPNGSLIYSTCTLPPMENEDNVKWATELGFRL
EEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEECCCEE
EYVNVPAGQRAFDGVSRRFHPHIQDTPGFFMAKLTKLP
EEEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCC
>Mature Secondary Structure 
PKHHTEGGVKIIEVARGIELDQEVYRHLLQYMDDGELDSYFESIRKPPRRYYVRVNTLK
CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEEEEEE
VSTDELLRRLKEHGITAYRDEVLDEAIWLPTEGPNRVGASRRYVVADKYASESVYLGSNL
ECHHHHHHHHHHCCCHHHHHHHHHHEEECCCCCCCCCCCCCEEEEEECCCCCEEEECCCC
YGPGVLYMPNDIHAGDEVNVVSPNGDVVALGVAKINASEFRRGFRGIVVETTESVYRLPK
CCCEEEECCCCCCCCCEEEEECCCCCEEEEEEEECCHHHHHCCCCCEEEEECHHHHHCCC
LRDLDEWRFGLFYEQSLPAQWVGRLIDPGPNETIIDLCSAPGGKATHVAQLSGNKAIIIA
CCCCCHHHHCEEECCCCCHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEECCCEEEEEE
VDRSWSKVRQIEGNAARLGVRLMTYIEDSRFLHLNHPEFIGKADKVLIDPPCSDAGVRPK
ECCCHHHHHHCCCCHHHHHHHEEEEECCCCEEEECCHHHCCCCCCEEECCCCCCCCCCCE
LYYRLTMTDLINLVAYQRQFIKVAYSLLKPNGSLIYSTCTLPPMENEDNVKWATELGFRL
EEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEECCCEE
EYVNVPAGQRAFDGVSRRFHPHIQDTPGFFMAKLTKLP
EEEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]